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Algorithm specific parameters:
Full window size : 21
Core window size : 11
Wedge window size: 5
Using hydrophobicity file: GES-scale
Cutoff for certain transmembrane segments: 1.00
Cutoff for putative transmembrane segments: 0.60
Critical distance between 2 transmembrane segments: 2
Critical loop length: 60
Kingdom: procaryote
Using cyt/ext file: CYTEXT-scale
Sequence : only (72 res)
RRRVAKLFADAGLVCITSFISPYTRRRRRRRRRRRRRRRRRRVAKLFADAGLVCITSFIS
PYTRRRRRRRRR
Found: 2 segments
Candidate membrane-spanning segments:
Helix Begin - End Score Certainity
1 4 - 24 0.960 Putative
2 43 - 63 0.960 Putative
Total of 4 structures are to be tested
HEADER START STOP LEN PROB HP DARGLYS DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY 1 0.90 -24.00 0.00 -10.00 -1.00
TOPOLOGY N-out ? N-out
EXT_LOOP 1 3 3 4.00 ( -1.01)
TRANSMEM 4 24 21 0.90 0.96
CYT_LOOP 25 72 48 28.00 ( -0.93)
//
HEADER START STOP LEN PROB HP DARGLYS DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY 2 0.90 14.00 0.00 7.00 -0.92
TOPOLOGY N-in ? N-in
CYT_LOOP 1 42 42 23.00 ( -0.90)
TRANSMEM 43 63 21 0.90 0.96
EXT_LOOP 64 72 9 9.00 ( -1.01)
//
HEADER START STOP LEN PROB HP DARGLYS DCYTEXT DNCHARGE DNNEGPOS
TOPOLOGY 3 0.90 -6.00 0.00 -10.00 -1.00
TOPOLOGY N-out ? N-out
EXT_LOOP 1 3 3 4.00 ( -1.01)
TRANSMEM 4 24 21 0.90 0.96
CYT_LOOP 25 42 18 19.00 ( -1.01)
TRANSMEM 43 63 21 0.90 0.96
EXT_LOOP 64 72 9 9.00 ( -1.01)
//
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