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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN">
<HTML>
<HEAD>
<TITLE>class SeqDataSet</TITLE>
<META NAME="GENERATOR" CONTENT="DOC++ 3.4.8">
</HEAD>
<BODY BGCOLOR="#ffffff">
<H2>class <A HREF="#DOC.DOCU">SeqDataSet</A></H2></H2><BLOCKQUOTE>This class defines the standard framework of Sequence Data processing</BLOCKQUOTE>
<HR>
<H2>Inheritance:</H2>
<APPLET CODE="ClassGraph.class" WIDTH=600 HEIGHT=185>
<param name=classes value="CObject,MObject.html,CDataSet,MDataSet.html,CSeqDataSet,MSeqDataSet.html,CPhonemeSeqDataSet,MPhonemeSeqDataSet.html,CMatSeqDataSet,MMatSeqDataSet.html,CHtkSeqDataSet,MHtkSeqDataSet.html">
<param name=before value="M,M,M,M|_,MR_,Mr_">
<param name=after value="Md_SP,Md_,M,M,M,M">
<param name=indent value="0,1,2,2,2,2">
<param name=arrowdir value="down">
</APPLET>
<HR>
<DL>
<P><DL>
<DT><H3>Public Fields</H3><DD><DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif><!1><A HREF="SeqExample.html">SeqExample</A>* <B><A HREF="#DOC.108.1">examples</A></B>
<DD><I>the vector of examples of the dataset</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>char** <B><A HREF="#DOC.108.2">file_names</A></B>
<DD><I>names of data files</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.3">n_file_names</A></B>
<DD><I>the number of data files to read</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>bool <B><A HREF="#DOC.108.4">norm_inputs</A></B>
<DD><I>do we normalize the inputs?</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>bool <B><A HREF="#DOC.108.5">norm_observations</A></B>
<DD><I>do we normalize the observations?</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>real* <B><A HREF="#DOC.108.6">mean_in</A></B>
<DD><I>if we normalize the inputs, this vector contains the mean of the inputs</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>real* <B><A HREF="#DOC.108.7">mean_ob</A></B>
<DD><I>if we normalize the inputs, this vector contains the mean of the observations</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>real* <B><A HREF="#DOC.108.8">stdv_in</A></B>
<DD><I>if we normalize the inputs, this vector contains the stdev of the inputs</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>real* <B><A HREF="#DOC.108.9">stdv_ob</A></B>
<DD><I>if we normalize the inputs, this vector contains the stdev of the observations</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.10">current_frame</A></B>
<DD><I>the current frame we are working on</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.11">n_frames</A></B>
<DD><I>the number of frames of the current example</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.12">n_observations</A></B>
<DD><I>the number of observations of the examples</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.13">tot_n_frames</A></B>
<DD><I>the total number of frames in the dataset</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>char* <B><A HREF="#DOC.108.14">kind</A></B>
<DD><I>some dataset keeps an information of the kind of the data.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.15">n_seqtargets</A></B>
<DD><I>if there are targets, the length of the seqtargets matrix.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>real** <B><A HREF="#DOC.108.16">seqtargets</A></B>
<DD><I>the targets of the current example</I>
</DL></P>
<P><DL>
<DT><H3>Public Methods</H3><DD><DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>virtual void <B><A HREF="#DOC.108.17">freeMemory</A></B>() = 0
<DD><I>each Subclass of <TT>SeqDataSet</TT> is forced to allocate/free its own memory.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>int <B><A HREF="#DOC.108.18">removeUnlikelyFrames</A></B>(<!1><A HREF="Distribution.html">Distribution</A>* likely_distr, <!1><A HREF="Distribution.html">Distribution</A>* unlikely_distr, int obs_offset = 0, int range=5)
<DD><I>Remove the frames considering as unlinkely and return the number of removed frames</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.19">removeUnusedData</A></B>(bool* mask)
<DD><I>Remove the column of data unused </I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.20">normalizeUsingDataSet</A></B>( <!1><A HREF="SeqDataSet.html">SeqDataSet</A>* )
<DD><I>Normalize the <TT>DataSet</TT> using the normalization values of another <TT>DataSet</TT>.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.21">normalize</A></B>()
<DD><I>normalize the database</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.22">setFrame</A></B>( int )
<DD><I>set the current frame of the current example</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.23">totNFrames</A></B>()
<DD><I>compute the total number of frames in the database.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.24">toOneFramePerExample</A></B>()
<DD><I>transform the database such that there is one frame per example.</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>virtual void <B><A HREF="#DOC.108.25">readTargets</A></B>(char* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)
<DD><I>read seqtargets from a file</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>virtual void <B><A HREF="#DOC.108.26">readAlignments</A></B>(char* <!1><A HREF="Measurer.html#DOC.30.2">file</A>, bool needs_all_examples = false)
<DD><I>read alignments from a file</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.27">setSelectedFrames</A></B>( int* <!1><A HREF="SeqExample.html#DOC.107.10">selected_frames</A>, int n_selected_frames )
<DD><I>for the current example, consider only the <TT>selected_frames</TT></I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.28">unsetSelectedFrames</A></B>()
<DD><I>for the current example, consider all the frames</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>void <B><A HREF="#DOC.108.29">display</A></B>()
<DD><I>print the database, for debugging purposes only</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>virtual void <B><A HREF="#DOC.108.30">loadFILE</A></B>(FILE* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)
<DD><I>Load the normalization parameters</I>
<DT>
<IMG ALT="[more]" BORDER=0 SRC=icon1.gif>virtual void <B><A HREF="#DOC.108.31">saveFILE</A></B>(FILE* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)
<DD><I>Save the normalization parameters</I>
</DL></P>
</DL>
<HR><H3>Inherited from <A HREF="DataSet.html">DataSet</A>:</H3>
<DL>
<P><DL>
<DT><H3>Public Fields</H3><DD><DT>
<IMG ALT="o" SRC=icon2.gif>int* <B>selected_examples</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>int <B>current_example</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>int <B>n_targets</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>void* <B>targets</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>int <B>n_inputs</B>
<DT>
<IMG ALT="o" SRC=icon2.gif><!1><A HREF="List.html">List</A>* <B>inputs</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>int <B>n_examples</B>
<DT>
<IMG ALT="o" SRC=icon2.gif>int <B>n_real_examples</B>
</DL></P>
<P><DL>
<DT><H3>Public Methods</H3><DD><DT>
<IMG ALT="o" SRC=icon2.gif>void <B>setExample</B>(int t)
<DT>
<IMG ALT="o" SRC=icon2.gif>virtual void <B>setRealExample</B>(int t)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>pushSubset</B>(int* subset_, int n_examples_)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>popSubset</B>()
</DL></P>
</DL>
<HR><H3>Inherited from <A HREF="Object.html">Object</A>:</H3>
<DL>
<P><DL>
<DT><H3>Public Methods</H3><DD><DT>
<IMG ALT="o" SRC=icon2.gif>virtual void <B>init</B>()
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>addOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, int size, void* <!1><A HREF="Vec.html#DOC.81.3">ptr</A>, const char* <!1><A HREF="CmdLine.html#DOC.7.3">help</A>="", bool is_allowed_after_init=false)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>addIOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, int* <!1><A HREF="Vec.html#DOC.81.3">ptr</A>, int init_value, const char* <!1><A HREF="CmdLine.html#DOC.7.3">help</A>="", bool is_allowed_after_init=false)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>addROption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, real* <!1><A HREF="Vec.html#DOC.81.3">ptr</A>, real init_value, const char* <!1><A HREF="CmdLine.html#DOC.7.3">help</A>="", bool is_allowed_after_init=false)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>addBOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, bool* <!1><A HREF="Vec.html#DOC.81.3">ptr</A>, bool init_value, const char* <!1><A HREF="CmdLine.html#DOC.7.3">help</A>="", bool is_allowed_after_init=false)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>setOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, void* <!1><A HREF="Vec.html#DOC.81.3">ptr</A>)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>setIOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, int option)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>setROption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, real option)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>setBOption</B>(const char* <!1><A HREF="SeqExample.html#DOC.107.9">name</A>, bool option)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>load</B>(const char* filename)
<DT>
<IMG ALT="o" SRC=icon2.gif>void <B>save</B>(const char* filename)
</DL></P>
</DL>
<A NAME="DOC.DOCU"></A>
<HR>
<H2>Documentation</H2>
<BLOCKQUOTE>This class defines the standard framework of
Sequence Data processing
<P>DataSet with a vector of reals for inputs, vector of
reals for observations and vector of reals for targets
<P>Options:
<P>"normalize inputs" bool normalize the inputs by mean/stdv [ false ]
"normalize observations" bool normalize the observations by mean/stdv [ false ]
"normalize targets" bool normalize the targets by mean/stdv [ false ]
<P>p
<P></BLOCKQUOTE>
<DL>
<A NAME="examples"></A>
<A NAME="DOC.108.1"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B><!1><A HREF="SeqExample.html">SeqExample</A>* examples</B></TT>
<DD>the vector of examples of the dataset
<DL><DT><DD></DL><P>
<A NAME="file_names"></A>
<A NAME="DOC.108.2"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>char** file_names</B></TT>
<DD>names of data files
<DL><DT><DD></DL><P>
<A NAME="n_file_names"></A>
<A NAME="DOC.108.3"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int n_file_names</B></TT>
<DD>the number of data files to read
<DL><DT><DD></DL><P>
<A NAME="norm_inputs"></A>
<A NAME="DOC.108.4"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>bool norm_inputs</B></TT>
<DD>do we normalize the inputs?
<DL><DT><DD></DL><P>
<A NAME="norm_observations"></A>
<A NAME="DOC.108.5"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>bool norm_observations</B></TT>
<DD>do we normalize the observations?
<DL><DT><DD></DL><P>
<A NAME="mean_in"></A>
<A NAME="DOC.108.6"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>real* mean_in</B></TT>
<DD>if we normalize the inputs, this vector contains the mean of the inputs
<DL><DT><DD></DL><P>
<A NAME="mean_ob"></A>
<A NAME="DOC.108.7"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>real* mean_ob</B></TT>
<DD>if we normalize the inputs, this vector contains the mean of the observations
<DL><DT><DD></DL><P>
<A NAME="stdv_in"></A>
<A NAME="DOC.108.8"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>real* stdv_in</B></TT>
<DD>if we normalize the inputs, this vector contains the stdev of the inputs
<DL><DT><DD></DL><P>
<A NAME="stdv_ob"></A>
<A NAME="DOC.108.9"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>real* stdv_ob</B></TT>
<DD>if we normalize the inputs, this vector contains the stdev of the observations
<DL><DT><DD></DL><P>
<A NAME="current_frame"></A>
<A NAME="DOC.108.10"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int current_frame</B></TT>
<DD>the current frame we are working on
<DL><DT><DD></DL><P>
<A NAME="n_frames"></A>
<A NAME="DOC.108.11"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int n_frames</B></TT>
<DD>the number of frames of the current example
<DL><DT><DD></DL><P>
<A NAME="n_observations"></A>
<A NAME="DOC.108.12"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int n_observations</B></TT>
<DD>the number of observations of the examples
<DL><DT><DD></DL><P>
<A NAME="tot_n_frames"></A>
<A NAME="DOC.108.13"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int tot_n_frames</B></TT>
<DD>the total number of frames in the dataset
<DL><DT><DD></DL><P>
<A NAME="kind"></A>
<A NAME="DOC.108.14"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>char* kind</B></TT>
<DD>some dataset keeps an information of the kind of the data.
this is used in Htk data files for instance
<DL><DT><DD></DL><P>
<A NAME="n_seqtargets"></A>
<A NAME="DOC.108.15"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int n_seqtargets</B></TT>
<DD>if there are targets, the length of the seqtargets matrix.
Note that its width is equal to n_targets.
<DL><DT><DD></DL><P>
<A NAME="seqtargets"></A>
<A NAME="DOC.108.16"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>real** seqtargets</B></TT>
<DD>the targets of the current example
<DL><DT><DD></DL><P>
<A NAME="freeMemory"></A>
<A NAME="DOC.108.17"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>virtual void freeMemory() = 0</B></TT>
<DD>each Subclass of <TT>SeqDataSet</TT> is forced
to allocate/free its own memory. This is
forced upon them for historical reasons
eg IOTorch allocates/frees its own memory
which is used in <TT>StaticMatSeqDataSet</TT>
<DL><DT><DD></DL><P>
<A NAME="removeUnlikelyFrames"></A>
<A NAME="DOC.108.18"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>int removeUnlikelyFrames(<!1><A HREF="Distribution.html">Distribution</A>* likely_distr, <!1><A HREF="Distribution.html">Distribution</A>* unlikely_distr, int obs_offset = 0, int range=5)</B></TT>
<DD>Remove the frames considering as unlinkely and return the number of
removed frames
<DL><DT><DD></DL><P>
<A NAME="removeUnusedData"></A>
<A NAME="DOC.108.19"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void removeUnusedData(bool* mask)</B></TT>
<DD>Remove the column of data unused
<DL><DT><DD></DL><P>
<A NAME="normalizeUsingDataSet"></A>
<A NAME="DOC.108.20"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void normalizeUsingDataSet( <!1><A HREF="SeqDataSet.html">SeqDataSet</A>* )</B></TT>
<DD>Normalize the <TT>DataSet</TT> using the normalization values
of another <TT>DataSet</TT>. If the other <TT>DataSet</TT> isn't
normalized, nothing happens...
<DL><DT><DD></DL><P>
<A NAME="normalize"></A>
<A NAME="DOC.108.21"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void normalize()</B></TT>
<DD>normalize the database
<DL><DT><DD></DL><P>
<A NAME="setFrame"></A>
<A NAME="DOC.108.22"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void setFrame( int )</B></TT>
<DD>set the current frame of the current example
<DL><DT><DD></DL><P>
<A NAME="totNFrames"></A>
<A NAME="DOC.108.23"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void totNFrames()</B></TT>
<DD>compute the total number of frames in the database.
keep this value in tot_n_frames
<DL><DT><DD></DL><P>
<A NAME="toOneFramePerExample"></A>
<A NAME="DOC.108.24"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void toOneFramePerExample()</B></TT>
<DD>transform the database such that there is one frame per example.
by default, each file corresponds to one sequence.
<DL><DT><DD></DL><P>
<A NAME="readTargets"></A>
<A NAME="DOC.108.25"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>virtual void readTargets(char* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)</B></TT>
<DD>read seqtargets from a file
<DL><DT><DD></DL><P>
<A NAME="readAlignments"></A>
<A NAME="DOC.108.26"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>virtual void readAlignments(char* <!1><A HREF="Measurer.html#DOC.30.2">file</A>, bool needs_all_examples = false)</B></TT>
<DD>read alignments from a file
<DL><DT><DD></DL><P>
<A NAME="setSelectedFrames"></A>
<A NAME="DOC.108.27"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void setSelectedFrames( int* <!1><A HREF="SeqExample.html#DOC.107.10">selected_frames</A>, int n_selected_frames )</B></TT>
<DD>for the current example, consider only the <TT>selected_frames</TT>
<DL><DT><DD></DL><P>
<A NAME="unsetSelectedFrames"></A>
<A NAME="DOC.108.28"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void unsetSelectedFrames()</B></TT>
<DD>for the current example, consider all the frames
<DL><DT><DD></DL><P>
<A NAME="display"></A>
<A NAME="DOC.108.29"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>void display()</B></TT>
<DD>print the database, for debugging purposes only
<DL><DT><DD></DL><P>
<A NAME="loadFILE"></A>
<A NAME="DOC.108.30"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>virtual void loadFILE(FILE* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)</B></TT>
<DD>Load the normalization parameters
<DL><DT><DD></DL><P>
<A NAME="saveFILE"></A>
<A NAME="DOC.108.31"></A>
<DT><IMG ALT="o" BORDER=0 SRC=icon2.gif><TT><B>virtual void saveFILE(FILE* <!1><A HREF="Measurer.html#DOC.30.2">file</A>)</B></TT>
<DD>Save the normalization parameters
<DL><DT><DD></DL><P></DL>
<HR>
<DL><DT><B>Direct child classes:
</B><DD><A HREF="PhonemeSeqDataSet.html">PhonemeSeqDataSet</A><BR>
<A HREF="MatSeqDataSet.html">MatSeqDataSet</A><BR>
<A HREF="HtkSeqDataSet.html">HtkSeqDataSet</A><BR>
</DL>
<DL><DT><DT><B>Author:</B><DD>Bison Ravi (francois.belisle@idiap.ch)
Johnny Mariethoz (Johnny.Mariethoz@idiap.ch)
Samy Bengio (bengio@idiap.ch)
<DD></DL><P><P><I><A HREF="index.html">Alphabetic index</A></I> <I><A HREF="HIER.html">HTML hierarchy of classes</A> or <A HREF="HIERjava.html">Java</A></I></P><HR>
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