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<!DOCTYPE html SYSTEM "about:legacy-compat" [
<!ENTITY plusmn "±">
]>
<html xmlns:z="http://www.hekkelman.com/libzeep/m2" lang="en">
<head>
<meta charset="utf8"/>
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no" />
<title>Tortoize web service</title>
<link href='css/pdb-redo-style.css' z:href="@{/tortoize/css/pdb-redo-style.css}" rel='stylesheet' type="text/css"/>
<script z:src="@{/tortoize/scripts/index.js}"></script>
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<div class="h-left">
<a href="https://pdb-redo.eu/" z:href="@{/}"><img z:src="@{/tortoize/images/PDB_logo_rect_medium.svg}" alt="PDB-REDO logo" /></a>
</div>
<div class="h-right">
<div class="first">
<nav>
<a href="http://www.nki.nl" target="_BLANK">NKI Research</a> |
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<a href="http://www.nki.nl/divisions/biochemistry/perrakis-a-group/" target="_BLANK">Perrakis group</a>
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<nav class="navbar navbar-expand-sm bg-nav-secondary navbar-dark">
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent"
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<a class="nav-link" z:href="@{/}">Home</a>
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</nav>
</header>
<div class="container">
<h6 class="mb-3 mt-5">Tortoize, calculate Ramachandran Z-scores</h6>
<form id="tortoize-form" action="tortoize" enctype="multipart/form-data" method="POST">
<div class="custom-file mb-3">
<input type="file" class="custom-file-input" aria-describedby="input-group-coordinates-file"
name="data" id="coordinates-file" required="required" />
<label class="custom-file-label" for="coordinates-file">Choose coordinates file</label>
</div>
<div class="custom-file mb-3">
<input type="file" class="custom-file-input" aria-describedby="input-group-restraints-file"
name="dict" id="restraints-file" />
<label class="custom-file-label" for="restraints-file">Choose custom restraints file (optional)</label>
</div>
<button type="submit" form="tortoize-form" class="btn btn-primary mb-3">Calculate</button>
</form>
<hr/>
<table id='tortoize-table' class="table table" style="display: none;">
<caption>Calculated scores</caption>
<thead>
<tr>
<th>Model</th>
<th>Ramachandran z-score</th>
<th>Side-chain z-score</th>
</tr>
</thead>
<tbody></tbody>
</table>
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<footer class="container">
<p><strong>Sobolev et al.</strong> <em>A Global Ramachandran Score Identifies Protein Structures with
Unlikely Stereochemistry</em>, Structure (2020), DOI: <a href="https://doi.org/10.1016/j.str.2020.08.005">10.1016/j.str.2020.08.005</a></p>
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