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Description: Make the sample data reproducible
Set a fixed hash seed for Perl before generating sample_data/transcripts.fasta
to get reproducible results
Author: Eduard Sanou <dhole@openmailbox.org>
Forwarded: https://github.com/TransDecoder/TransDecoder/pull/20
--- transdecoder.orig/sample_data/cufflinks_example/runMe.sh
+++ transdecoder/sample_data/cufflinks_example/runMe.sh
@@ -24,7 +24,7 @@
../../util/cufflinks_gtf_to_alignment_gff3.pl transcripts.gtf > transcripts.gff3
## generate transcripts fasta file
-../../util/cufflinks_gtf_genome_to_cdna_fasta.pl transcripts.gtf test.genome.fasta > transcripts.fasta
+PERL_HASH_SEED=0 ../../util/cufflinks_gtf_genome_to_cdna_fasta.pl transcripts.gtf test.genome.fasta > transcripts.fasta
## Extract the long ORFs
../../TransDecoder.LongOrfs -t transcripts.fasta
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