File: runMe.sh

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transdecoder 3.0.1%2Bdfsg-1
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#!/bin/bash

if [ ! -e Trinity.fasta ]; then
    gunzip -c Trinity.fasta.gz > Trinity.fasta
fi

../../TransDecoder.LongOrfs -t Trinity.fasta 

../../TransDecoder.Predict -t Trinity.fasta  --single_best_orf 

exit 0