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transdecoder 3.0.1%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 11,356 kB
  • ctags: 274
  • sloc: perl: 5,454; sh: 81; makefile: 51

Folder: util

d .. (parent)
d d rwxr-xr-x 28 bin
- - rwxr-xr-x 10,577 cdna_alignment_orf_to_genome_orf.pl
- - rwxr-xr-x 1,315 compute_base_probs.pl
- - rwxr-xr-x 3,140 create_start_PSSM.pl
- - rwxr-xr-x 2,508 cufflinks_gtf_genome_to_cdna_fasta.pl
- - rwxr-xr-x 2,151 cufflinks_gtf_to_alignment_gff3.pl
- - rwxr-xr-x 1,959 cufflinks_gtf_to_bed.pl
- - rwxr-xr-x 2,967 extract_FL_subset.pl
- - rwxr-xr-x 1,012 ffindex_resume.pl
- - rwxr-xr-x 864 gene_list_to_gff.pl
- - rwxr-xr-x 646 get_FL_accs.pl
- - rwxr-xr-x 1,331 get_longest_ORF_per_transcript.pl
- - rwxr-xr-x 746 get_top_longest_fasta_entries.pl
- - rwxr-xr-x 901 gff3_file_to_bed.pl
- - rwxr-xr-x 4,520 gff3_file_to_proteins.pl
- - rwxr-xr-x 2,023 index_gff3_files_by_isoform.pl
- - rwxr-xr-x 1,659 nr_ORFs_gff3.pl
- - rwxr-xr-x 950 pfam_mpi.pbs
- - rwxr-xr-x 9,248 pfam_runner.pl
- - rwxr-xr-x 2,531 remove_eclipsed_ORFs.pl
- - rwxr-xr-x 1,895 score_CDS_liklihood_all_6_frames.pl
- - rwxr-xr-x 3,910 seq_n_baseprobs_to_logliklihood_vals.pl
- - rwxr-xr-x 4,505 single_best_ORF_per_transcript.pl