1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
#!/usr/bin/env perl
use strict;
use warnings;
use FindBin;
## we delete all files we don't need in this directory. Be careful in case users try running it somewhere else, outside this dir.
chdir $FindBin::Bin or die "error, cannot cd to $FindBin::Bin";
my @files_to_keep = qw (cleanme.pl
runMe.sh
stringtie_merged.gtf
stringtie_merged.transcripts.fasta
Makefile
);
my %keep = map { + $_ => 1 } @files_to_keep;
foreach my $file (<*>) {
if (! $keep{$file}) {
print STDERR "-removing file: $file\n";
unlink($file);
}
}
`rm -rf ./stringtie_merged.transcripts.fasta.transdecoder_dir`;
`rm -rf ./stringtie_merged.transcripts.fasta.transdecoder_dir.__checkpoints`;
`rm -rf ./stringtie_merged.transcripts.fasta.transdecoder_dir.__checkpoints_longorfs`;
exit(0);
|
