File: bam-read-man-include

package info (click to toggle)
transrate-tools 1.0.0-3
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 428 kB
  • sloc: cpp: 449; sh: 30; makefile: 7
file content (18 lines) | stat: -rw-r--r-- 358 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
[NAME]
bam-read \- Parse bam files after multi-mapping reads have been assigned and aggregate read mapping information by contig.

[SYNOPSIS]
Currently captured:

 - name
 - bases mapped
 - edit distance
 - bridges
 - length
 - reads mapped
 - both mapped
 - proper pair
 - good
 - uncovered bases
 - mean mapq
 - probability of coverage not being segmented