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#!/bin/bash
set -e
pkg=transrate-tools
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
# Double quote below to expand the temporary directory variable now versus
# later is on purpose.
# shellcheck disable=SC2064
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
#do_stuff_to_test_package#
echo -e "\e[93m\e[1mTest 1\e[0m"
bam-read SRR11828387.bam SRR11828387.csv
cat SRR11828387.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo
echo -e "\e[93m\e[1mTest 2\e[0m"
bam-read SRR11828399.bam SRR11828399.csv
cat SRR11828399.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo
echo -e "\e[93m\e[1mTest 3\e[0m"
bam-read SRR11728641.bam SRR11728641.csv
cat SRR11728641.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo
echo -e "\e[93m\e[1mTest 4\e[0m"
bam-read SRR11728627.bam SRR11728627.csv
cat SRR11728627.csv
echo -e "\e[92m\e[1mPassed\e[0m"
echo
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