package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye, sid
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62

Folder: src

d .. (parent)
d d rwxr-xr-x 4,096 .deps
d d rwxr-xr-x 95 mpi_deprecated
- - rw-r--r-- 3,269 Cigar.cpp
- - rw-r--r-- 586 Cigar.hpp
- - rw-r--r-- 27,306 DeBruijnGraph.cpp
- - rw-r--r-- 2,815 DeBruijnGraph.hpp
- - rwxr-xr-x 201,292 FastaToDeBruijn
- - rw-r--r-- 10,029 FastaToDeBruijn.cpp
- - rw-r--r-- 651 Fasta_entry.cpp
- - rw-r--r-- 353 Fasta_entry.hpp
- - rw-r--r-- 3,820 Fasta_reader.cpp
- - rw-r--r-- 741 Fasta_reader.hpp
- - rw-r--r-- 40,390 IRKE.cpp
- - rw-r--r-- 5,933 IRKE.hpp
- - rw-r--r-- 27,762 IRKE_run.cpp
- - rw-r--r-- 23,500 KmerCounter.cpp
- - rw-r--r-- 5,334 KmerCounter.hpp
- - rw-r--r-- 3,207 Ktree.cpp
- - rw-r--r-- 523 Ktree.hpp
- - rw-r--r-- 2,978 KtreeNode.cpp
- - rw-r--r-- 740 KtreeNode.hpp
- - rw-r--r-- 6,882 MaskedKmerCounter.cpp
- - rw-r--r-- 2,454 MaskedKmerCounter.hpp
- - rw-r--r-- 4,115 SAM_entry.cpp
- - rw-r--r-- 1,525 SAM_entry.hpp
- - rw-r--r-- 785 SAM_reader.cpp
- - rw-r--r-- 367 SAM_reader.hpp
- - rwxr-xr-x 123,072 SNP_stomper
- - rw-r--r-- 8,493 SNP_stomper.cpp
- - rwxr-xr-x 954 argProcessor.cpp
- - rwxr-xr-x 430 argProcessor.hpp
- - rwxr-xr-x 110,676 cigar_tweaker
- - rw-r--r-- 3,951 cigar_tweaker.cpp
- - rw-r--r-- 81 common.hpp
- - rwxr-xr-x 154,920 fastaToKmerCoverageStats
- - rw-r--r-- 12,223 fastaToKmerCoverageStats.cpp
- - rwxr-xr-x 243,312 inchworm
- - rw-r--r-- 554 irke_common.hpp
- - rw-r--r-- 1,192 prev.Makefile.am
- - rwxr-xr-x 143,456 pull_reads_with_kmers
- - rw-r--r-- 7,170 pull_reads_with_kmers.cpp
- - rw-r--r-- 9,530 sequenceUtil.cpp
- - rw-r--r-- 1,472 sequenceUtil.hpp
- - rw-r--r-- 1,043 stacktrace.cpp
- - rw-r--r-- 300 stacktrace.hpp
- - rw-r--r-- 1,580 string_util.cpp
- - rw-r--r-- 273 string_util.hpp