3
ëyû^à  ã               @   st   d dl mZmZmZmZ d dlZd dlZd dlZd dlZd dl	Z	d dl
Z
d dlZd dlZejeƒZG dd„ dƒZdS )é    )Úabsolute_importÚdivisionÚprint_functionÚunicode_literalsNc               @   s(   e Zd ZdZedd„ ƒZedd„ ƒZdS )Ú	DP_matrixzQ
    defines the dynamic programming matrix for the node multiple alignments
    c             C   s`   t ƒ }xTtd| d ƒD ]B}g }x.td|d ƒD ]}||dddœ}|j|ƒ q.W |j|ƒ qW |S )Nr   é   )ÚiÚjÚbtÚscoreéÿÿÿÿ)ÚlistÚrangeÚappend)Znum_rowsZnum_colsÚ	dp_matrixr   Úrowr	   Ústruct© r   úM/broad/hptmp/bhaas/trinityrnaseq/Analysis/SuperTranscripts/pylib/DP_matrix.pyÚbuild_DP_matrix   s    zDP_matrix.build_DP_matrixc             C   s\   t | ƒ}t | d ƒ}tjdj||ƒƒ d}x,| D ]$}dd„ |D ƒ}|dj|ƒd 7 }q0W |S )Nr   zMatrix is {} X {}Ú c             S   s   g | ]}t |d  ƒ‘qS )r   )Ústr)Ú.0Úxr   r   r   ú
<listcomp>1   s    z&DP_matrix.toString.<locals>.<listcomp>ú	Ú
)ÚlenÚloggerÚdebugÚformatÚjoin)r   ZnrowÚncolÚret_textr   Zstr_rowr   r   r   ÚtoString(   s    
zDP_matrix.toStringN)Ú__name__Ú
__module__Ú__qualname__Ú__doc__Ústaticmethodr   r$   r   r   r   r   r      s   r   )Ú
__future__r   r   r   r   ÚosÚsysÚreÚloggingÚargparseÚcollectionsÚnumpyÚtimeÚ	getLoggerr%   r   r   r   r   r   r   Ú<module>   s   
