File: SVector.h

package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62
file content (129 lines) | stat: -rw-r--r-- 2,417 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
#ifndef SVECTOR_H_
#define SVECTOR_H_

using namespace std;

#include <vector>
#include <iterator>
#include <assert.h>
#include <algorithm>
#include "base/ErrorHandling.h"

template <class T> 
class svec : public vector<T> 
{
 public:

  int isize() const {return (int)vector<T>::size();}
  long long lsize() const {return vector<T>::size();}

  const T & operator[] (long long i) const {
#ifndef NDEBUG
    if (i>= lsize()) {
      cout << "ERROR: i=" << i << " lsize=" << lsize() << endl;
      ThrowError("i>=lsize()", "svec");
    }
    if (i<0) {
      cout << "ERROR: i=" << i << " lsize=" << lsize() << endl;
      ThrowError("i<0", "svec");
    }
    //assert(i<lsize());
    //assert(i>=0);
#endif
    return vector<T>::operator[](i);
  }

  T & operator[] (long long i) {
#ifndef NDEBUG
    if (i>= lsize()) {
      cout << "ERROR: i=" << i << " lsize=" << lsize() << endl;
      ThrowError("i>=lsize()", "svec");
    }
    if (i<0) {
      cout << "ERROR: i=" << i << " lsize=" << lsize() << endl;
      ThrowError("i<0", "svec");
    }
    //assert(i<lsize());
    //assert(i>=0);
#endif
    return vector<T>::operator[](i);
  }



};


template <class T> 
class vec : public svec<T> 
{
};

template<class T> 
void Sort(svec<T>& v)
{
  sort(v.begin(), v.end());
}


template<class T> 
void UniqueSort(svec<T>& v)
{
  sort(v.begin(), v.end());

  long long i;
  long long k = 0;
  for (i=0; i<v.lsize(); i++) {
    v[k] = v[i];
    while (i+1<v.lsize() &&  !(v[k] < v[i+1]))
      i++;
  
    k++;    
  }
  v.resize(k);
}

template<class Iter, class T>
Iter binary_find(Iter begin, Iter end, T val)
{
    // Finds the lower bound in at most log(last - first) + 1 comparisons
    Iter i = std::lower_bound(begin, end, val);

    if (i != end && !(val < *i))
        return i; // found
    else
        return end; // not found
}

template<class T> 
long long BinSearch(svec<T> & v, const T & item) 
{
  typename svec<T>::iterator iter = binary_find(v.begin(), v.end(), item);
  if (iter == v.end())
    return -1;

  return iter - v.begin();
}

template<class T> 
long long BinSearchFuzzy(svec<T> & v, const T & item) 
{
  typename svec<T>::iterator iter;    
  typename svec<T>::iterator begin = v.begin();
  typename svec<T>::iterator end = v.end();
  iter = lower_bound(begin, end, item);
  long pos = distance(begin, iter);
  
  if (pos < 0)
    return -1;

  return pos;

}

 


#endif //SVECTOR_H_