File: jellyfish-path

package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62
file content (12 lines) | stat: -rw-r--r-- 336 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
Description:Jellyfish path
--- trinityrnaseq.orig/util/misc/run_jellyfish.pl
+++ trinityrnaseq/util/misc/run_jellyfish.pl
@@ -11,7 +11,7 @@
 my $hash_size = $ARGV[1] or die $usage;
 
 
-my $JELLYFISH_DIR = $FindBin::RealBin . "/../../trinity-plugins/jellyfish-1.1.3";
+my $JELLYFISH_DIR = "/usr";
 my $CPU = 4;
 my $min_kmer_cov = 1;