File: plot_comparison.Rscript

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#!/usr/bin/env Rscript

args<-commandArgs(TRUE)

if (length(args) == 0) {
    stop("Error, require params: consolidated_dat_filename");
}

filename = args[1]

data = read.table(filename, header=T)
pdf(paste0(filename, '.pdf'))

c = cor(-1*log10(data$g_padj), -1*log10(data$s_padj), use='complete.obs')

write(c, file=paste0(filename, '.cor'))

plot(-1*log10(data$g_padj), -1*log10(data$s_padj), main=paste0(filename, ", Cor: ", c))