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#!/usr/bin/env perl
use strict;
use warnings;
use FindBin;
## we delete all files we don't need in this directory. Be careful in case users try running it somewhere else, outside this dir.
chdir $FindBin::RealBin or die "error, cannot cd to $FindBin::RealBin";
my @files_to_keep = qw (cleanme.pl
test_PE_disordered.sh
test_PE_perfect_ordering.sh
test_PE_perfect_ordering.w_base_cov_stats.sh
test_SE_normalization.sh
Makefile
test_PE_normalization.w_base_cov_stats.sh
test_PE_normalization.sh
test_PE_normalization.mult_read_sets.sh
test_PE_normalization_useFASTA.sh
);
my %keep = map { + $_ => 1 } @files_to_keep;
`rm -rf ./tmp_normalized_reads/`;
`rm -rf ./single_tmp_norm_reads/`;
`rm -rf ./tmp_PE_norm_dir`;
`rm -rf ./test_multi_read_sets_norm_outdir/`;
`rm -rf ./tmp_PE_norm_FA_dir`;
foreach my $file (<*>) {
if (! $keep{$file}) {
print STDERR "-removing file: $file\n";
unlink($file);
}
}
exit(0);
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