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#!/usr/bin/env perl
use strict;
use warnings;
my $usage = "usage: $0 (count|percent) A.org_rep B.org_rep ...\n\n";
my $type = shift @ARGV;
my @org_rep_files = @ARGV or die $usage;
unless ($type eq 'count' || $type eq 'percent') { die $usage; }
main: {
my %matrix;
my %species_to_total_percentage;
foreach my $org_rep_file (@org_rep_files) {
open (my $fh, $org_rep_file) or die $!;
while (<$fh>) {
chomp;
my ($species, $count, $percent) = split(/\t/);
$percent =~ s/\%//;
my $value = $percent;
if ($type eq 'count') {
$value = $count;
}
$matrix{$species}->{$org_rep_file} = $value;
$species_to_total_percentage{$species} += $value;
}
close $fh;
}
my @species = reverse sort {$species_to_total_percentage{$a} <=> $species_to_total_percentage{$b}} keys %species_to_total_percentage;
print "#\t" . join("\t", @org_rep_files) . "\n";
foreach my $specie (@species) {
print "$specie";
foreach my $org (@org_rep_files) {
my $count = $matrix{$specie}->{$org} || 0;
print "\t$count";
}
print "\n";
}
exit(0);
}
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