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#!/usr/bin/env perl
use strict;
use warnings;
my $usage = "\n\tusage: $0 A.FL_selected B.FL_selected [RESTRICT_TO_FAILURES]\n\n";
my $A_stats_file = $ARGV[0] or die $usage;
my $B_stats_file = $ARGV[1] or die $usage;
my $RESTRICT_TO_FAILURES = $ARGV[2] || 0;
my $MIN_PER_LEN = 99;
my $MAX_PER_GAP = 1;
main: {
my %A_stats = &parse_stats($A_stats_file);
my %B_stats = &parse_stats($B_stats_file);
my %trans = map { + $_ => 1 } (keys %A_stats, keys %B_stats);
foreach my $trans_acc (keys %trans) {
my $A_FL = $A_stats{$trans_acc} || ".";
my $B_FL = $B_stats{$trans_acc} || ".";
if ($RESTRICT_TO_FAILURES) {
unless ($A_FL eq "." || $B_FL eq ".") {
next;
}
}
my ($trans, $gene) = split(/;/, $trans_acc);
print join("\t", $gene, $trans, $trans_acc, $A_FL, $B_FL) . "\n";
}
exit(0);
}
####
sub parse_stats {
my ($stats_file) = @_;
my %trans_to_stats;
open (my $fh, $stats_file) or die $!;
while (<$fh>) {
chomp;
my $line = $_;
my @x = split(/\t/);
my $trans = $x[0];
my $reco = $x[1];
$trans_to_stats{$trans} = $reco;
}
close $fh;
return (%trans_to_stats);
}
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