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#!/usr/bin/env perl
use strict;
use warnings;
use lib ("/usr/lib/trinityrnaseq/PerlLib");
use Fasta_reader;
my $usage = "usage: $0 fastaFile\n\n";
my $file = $ARGV[0] or die $usage;
my $fasta_reader = new Fasta_reader($file);
print join("\t", "#fasta_entry", "length") . "\n";
while (my $seq_obj = $fasta_reader->next()) {
my $sequence = $seq_obj->get_sequence();
my $accession = $seq_obj->get_accession();
print join("\t", $accession, length($sequence)) . "\n";
}
exit(0);
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