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#!/usr/bin/env perl
use strict;
use warnings;
my $usage = "usage: $0 file.audit_summary\n\n";
my $filename = $ARGV[0] or die $usage;
main: {
my %yes_no_counter;
my $total_reco = 0;
my $total_ref = 0;
my $total_FL = 0;
open (my $fh, $filename) or die $!;
while (<$fh>) {
if (/ref_fa/) { next; }
chomp;
my @x = split(/\t/);
my $yes_or_no = $x[4];
$yes_no_counter{$yes_or_no}++;
my $num_reco = $x[3];
$total_reco += $num_reco;
my $num_ref = $x[1];
$total_ref += $num_ref;
my $num_FL = $x[2];
$total_FL += $num_FL;
}
close $fh;
my $num_yes = $yes_no_counter{YES} || 0;
my $num_no = $yes_no_counter{NO} ||0;
my $num_additional = $total_reco - $total_FL;
print join("\t", "#YES", "#NO", "#FL", "#TOT_Trans", "#Ref", "#additional") . "\n";
print join("\t", $num_yes, $num_no, $total_FL, $total_reco, $total_ref, $num_additional) . "\n";
exit(0);
}
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