File: README.md

package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62
file content (10 lines) | stat: -rw-r--r-- 285 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10

# run Trinity via docker

    % docker run --rm -v `pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity \
      --seqType fq \
      --left `pwd`/test_data/reads.left.fq.gz  \
      --right `pwd`/test_data/reads.right.fq.gz \
      --max_memory 1G --CPU 4 --output `pwd`/trinity_out_dir