File: irke_common.hpp

package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62
file content (28 lines) | stat: -rw-r--r-- 554 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
#ifndef __IRKE_COMMON__
#define __IRKE_COMMON__

namespace IRKE_COMMON {
    
    extern unsigned int MONITOR;

    // thread settings
    extern int MAX_THREADS_READ_PARSING;
    extern int NUM_THREADS;
    
    // various developer-evaluation settings.
    extern bool __DEVEL_no_kmer_sort;
    extern bool __DEVEL_no_greedy_extend;
    extern bool __DEVEL_no_tie_breaking;
    extern bool __DEVEL_zero_kmer_on_use;
    
    extern bool __DEVEL_rand_fracture;
    extern float __DEVEL_rand_fracture_prob;


    extern bool KEEP_TMP_FILES;

}

#endif