File: Makefile

package info (click to toggle)
trinityrnaseq 2.11.0%2Bdfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 417,528 kB
  • sloc: perl: 48,420; cpp: 17,749; java: 12,695; python: 3,124; sh: 1,030; ansic: 983; makefile: 688; xml: 62
file content (14 lines) | stat: -rw-r--r-- 709 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
 

test:
# --min_expr_any
	../../util/filter_low_expr_transcripts.pl -m kallisto-trans.TMM.EXPR.matrix --transcripts ../test_DATA/Trinity.fasta --min_expr_any 1.0 > filt.min_expr_any.1.0.out 2>filt.min_expr_any.1.0.err
# --min_pct_dom_iso
	../../util/filter_low_expr_transcripts.pl -t ../test_DATA/Trinity.fasta -m kallisto-trans.TMM.EXPR.matrix --trinity_mode --min_pct_dom_iso 70 > filt.min_pct_dom_iso.70.out 2>filt.min_pct_dom_iso.70.err
# --highest_iso_only
	../../util/filter_low_expr_transcripts.pl -t ../test_DATA/Trinity.fasta -m kallisto-trans.TMM.EXPR.matrix --trinity_mode --highest_iso_only > filt.highest_iso_only.out 2>filt.highest_iso_only.err
	touch test


clean:
	rm -f ./filt.*
	rm -f ./test