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.. (parent) |
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d |
rwxr-xr-x |
83 |
tests
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rwxr-xr-x |
636 |
GG_partitioned_trinity_aggregator.pl
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- |
rwxr-xr-x |
2,036 |
SAM_coordSorted_fragment_Read_coverage_writer.pl
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- |
rwxr-xr-x |
3,223 |
SAM_coordSorted_fragment_coverage_writer2.pl
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- |
rwxr-xr-x |
803 |
SAM_extract_properly_mapped_pairs.pl
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- |
rwxr-xr-x |
1,230 |
SAM_extract_uniquely_mapped_reads.pl
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- |
rwxr-xr-x |
938 |
SAM_filter_out_unmapped_reads.pl
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- |
rwxr-xr-x |
2,598 |
SAM_ordered_pair_jaccard.pl
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- |
rwxr-xr-x |
2,150 |
SAM_set_transcribed_orient_info.pl
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- |
rwxr-xr-x |
1,079 |
SAM_strand_separator.pl
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- |
rwxr-xr-x |
8,757 |
SAM_to_frag_coords.pl
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- |
rwxr-xr-x |
1,314 |
add_LR_reads_to_iworm_bundle.pl
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- |
rwxr-xr-x |
1,175 |
annotate_chrysalis_welds_with_iworm_names.pl
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- |
rwxr-xr-x |
1,584 |
batch_cmds.pl
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- |
rwxr-xr-x |
8,505 |
bowtie2_wrapper.pl
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- |
rwxr-xr-x |
1,272 |
define_SAM_coverage_partitions2.pl
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- |
rwxr-xr-x |
1,377 |
define_coverage_partitions.pl
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- |
rwxr-xr-x |
4,824 |
eXpress_trans_to_gene_results.pl
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- |
rwxr-xr-x |
2,292 |
ensure_coord_sorted_sam.pl
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- |
rwxr-xr-x |
7,028 |
extract_reads_per_partition.pl
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- |
rwxr-xr-x |
3,048 |
fastQ_to_fastA.pl
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- |
rwxr-xr-x |
2,462 |
fastQ_to_tab.pl
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- |
rwxr-xr-x |
895 |
fasta_find_duplicates.pl
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- |
rwxr-xr-x |
698 |
fasta_to_tab.pl
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- |
rwxr-xr-x |
742 |
filter_iworm_by_min_length_or_cov.pl
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- |
rwxr-xr-x |
2,822 |
filter_transcripts_require_min_cov.pl
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- |
rwxr-xr-x |
1,839 |
fragment_coverage_writer.pl
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- |
rwxr-xr-x |
523 |
get_Trinity_gene_to_trans_map.pl
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- |
rwxr-xr-x |
4,437 |
inchworm_transcript_splitter.pl
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- |
rwxr-xr-x |
8,550 |
iworm_LR_to_scaff_pairs.pl
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- |
rwxr-xr-x |
1,975 |
jaccard_fasta_clipper.pl
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- |
rwxr-xr-x |
7,284 |
jaccard_wig_clipper.pl
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- |
rwxr-xr-x |
704 |
join_partitions_within_range.pl
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- |
rwxr-xr-x |
4,613 |
kallisto_trans_to_gene_results.pl
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- |
rwxr-xr-x |
1,073 |
merge_pair_and_LR_scaff_links.pl
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- |
rwxr-xr-x |
4,322 |
nbkc_merge_left_right_stats.pl
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- |
rwxr-xr-x |
2,747 |
nbkc_normalize.pl
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- |
rwxr-xr-x |
18,783 |
ordered_fragment_coords_to_jaccard.pl
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- |
rwxr-xr-x |
1,826 |
outfmt6_add_percent_match_length.pl
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- |
rwxr-xr-x |
6,328 |
partition_chrysalis_graphs_n_reads.pl
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- |
rwxr-xr-x |
3,884 |
partitioned_trinity_aggregator.pl
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- |
rw-r--r-- |
416 |
plugin_install_tests.sh
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- |
rwxr-xr-x |
5,679 |
prep_rnaseq_alignments_for_genome_assisted_assembly.pl
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- |
rwxr-xr-x |
892 |
print_butterfly_assemblies.pl
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- |
rwxr-xr-x |
1,631 |
process_GMAP_alignments_gff3_chimeras_ok.pl
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- |
rwxr-xr-x |
571 |
revcomp_fasta.pl
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- |
rwxr-xr-x |
5,292 |
run_TMM_scale_matrix.pl
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- |
rwxr-xr-x |
2,525 |
run_UpperQuartileNormalization_matrix.pl
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- |
rwxr-xr-x |
1,032 |
salmon_runner.pl
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- |
rwxr-xr-x |
5,009 |
salmon_trans_to_gene_results.pl
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- |
rwxr-xr-x |
8,193 |
scaffold_iworm_contigs.pl
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- |
rwxr-xr-x |
2,969 |
segment_GFF_partitions.pl
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- |
rwxr-xr-x |
1,187 |
trinity_install_tests.sh
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- |
rwxr-xr-x |
839 |
trinity_installer.py
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- |
rwxr-xr-x |
1,346 |
wig_clip_to_bed.pl
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- |
rwxr-xr-x |
1,575 |
write_partitioned_trinity_cmds.pl
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