1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
#!/usr/bin/env perl
use strict;
use warnings;
my $usage = "\n\nusage: $0 results.oracle\n\n";
my $oracle_results = $ARGV[0] or die $usage;
main: {
my %genes;
my %isoforms;
open (my $fh, $oracle_results) or die "Error, cannot open file $oracle_results";
while (<$fh>) {
chomp;
my @x = split(/\t/);
my $acc = $x[0];
my $TF = $x[4];
if ($TF eq "T") {
my ($trans, $gene) = split(/;/, $acc);
$genes{$gene}++;
$isoforms{$acc}++;
}
}
close $fh;
my $num_genes = scalar(keys %genes);
my $num_trans = scalar(keys %isoforms);
print "\n\nOracle_counts:\t$num_genes\t$num_trans\n\n";
exit(0);
}
|
