File: run_ext_test_singularity.sh

package info (click to toggle)
trinityrnaseq 2.15.2%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 468,004 kB
  • sloc: perl: 49,905; cpp: 17,993; java: 12,489; python: 3,282; sh: 1,989; ansic: 985; makefile: 717; xml: 62
file content (18 lines) | stat: -rwxr-xr-x 374 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
 
#!/bin/bash

set -ex

datadir="trinity_ext_sample_data_singularity"

if [ ! -e "$datadir" ]; then
    git clone https://github.com/trinityrnaseq/trinity_ext_sample_data.git ${datadir}
fi


version=`cat VERSION.txt`
simg="trinityrnaseq.v${version}.simg"

singularity exec -e -H /tmp -B `pwd`/${datadir}:/${datadir} \
       ${simg} \
       bash -c "cd /${datadir} && make"