File: run_test_docker.sh

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trinityrnaseq 2.15.2%2Bdfsg-1
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VERSION=`cat VERSION.txt`
CPU=$(nproc || sysctl -n hw.physicalcpu)

docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseq:$VERSION Trinity  --seqType fq --left `pwd`/test_data/reads.left.fq.gz  --right `pwd`/test_data/reads.right.fq.gz  --max_memory 1G --CPU ${CPU} --output `pwd`/trinity_out_dir_docker