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trinityrnaseq 2.15.2%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 468,004 kB
  • sloc: perl: 49,905; cpp: 17,993; java: 12,489; python: 3,282; sh: 1,989; ansic: 985; makefile: 717; xml: 62

Folder: PerlLib

d .. (parent)
d d rwxr-xr-x 4,096 CDNA
d d rwxr-xr-x 31 CanvasXpress
d d rwxr-xr-x 4,096 KmerGraphLib
d d rwxr-xr-x 46 Simulate
- - rwxr-xr-x 3,657 Ascii_genome_illustrator.pm
- - rw-r--r-- 1,110 BED_utils.pm
- - rwxr-xr-x 5,432 BHStats.pm
- - rw-r--r-- 2,032 CIGAR.pm
- - rw-r--r-- 1,172 CMD_processor.pm
- - rw-r--r-- 700 COMMON.pm
- - rw-r--r-- 2,000 ColorGradient.pm
- - rw-r--r-- 5,704 DelimParser.pm
- - rwxr-xr-x 11,394 EM.pm
- - rwxr-xr-x 6,322 Exons_to_geneobj.pm
- - rwxr-xr-x 4,008 Fasta_reader.pm
- - rwxr-xr-x 2,677 Fasta_retriever.pm
- - rwxr-xr-x 3,587 Fastq_reader.pm
- - rwxr-xr-x 4,662 GFF3_alignment_utils.pm
- - rwxr-xr-x 8,678 GFF3_utils.pm
- - rwxr-xr-x 2,163 GFF_maker.pm
- - rw-r--r-- 128,211 GTF.pm
- - rw-r--r-- 12,557 GTF_utils.pm
- - rwxr-xr-x 146,614 Gene_obj.pm
- - rwxr-xr-x 1,362 Gene_obj_indexer.pm
- - rw-r--r-- 2,516 Ktree.pm
- - rwxr-xr-x 9,890 Longest_orf.pm
- - rwxr-xr-x 17,918 Nuc_translator.pm
- - rw-r--r-- 6,689 Overlap_info.pm
- - rwxr-xr-x 4,430 Overlap_piler.pm
- - rwxr-xr-x 5,204 PSL_parser.pm
- - rw-r--r-- 5,620 Pipeliner.pm
- - rw-r--r-- 742 Process_cmd.pm
- - rw-r--r-- 11,665 SAM_entry.pm
- - rw-r--r-- 1,625 SAM_reader.pm
- - rwxr-xr-x 1,813 SingleLinkageClusterer.pm
- - rw-r--r-- 6,531 Thread_helper.pm
- - rwxr-xr-x 3,707 TiedHash.pm
- - rw-r--r-- 2,742 VCF_parser.pm
- - rwxr-xr-x 3,769 WigParser.pm
- - rwxr-xr-x 1,139 overlapping_nucs.ph
- - rwxr-xr-x 597 test_Fasta_retriever.pl
- - rwxr-xr-x 523 test_htc_gridrunner_LSF.pl
- - rwxr-xr-x 562 test_htc_gridrunner_SGE.pl