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Author: Michael R. Crusoe <crusoe@debian.org>
Description: Build bamsifter using the system htslib
Forwarded: not-needed
--- trinityrnaseq.orig/trinity-plugins/bamsifter/Makefile
+++ trinityrnaseq/trinity-plugins/bamsifter/Makefile
@@ -1,12 +1,6 @@
+all: bamsifter
+
+bamsifter: sift_bam_max_cov.cpp FORCE
+ $(CXX) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) -std=c++11 -o bamsifter sift_bam_max_cov.cpp -Wall -O2 -L./htslib/build/lib/ -I./htslib/build/include -lhts
-
-cwd = $(shell pwd)
-
-sift_bam_max_cov: sift_bam_max_cov.cpp htslib/version.h
- $(CXX) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) -std=c++11 -o _sift_bam_max_cov sift_bam_max_cov.cpp -Wall -O2 -L./htslib/build/lib/ -I./htslib/build/include -lhts
-
-
-htslib/version.h :
- ./build_htslib.sh
-
-
+FORCE:
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