File: Makefile

package info (click to toggle)
trinityrnaseq 2.15.2%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 468,004 kB
  • sloc: perl: 49,905; cpp: 17,993; java: 12,489; python: 3,282; sh: 1,989; ansic: 985; makefile: 717; xml: 62
file content (12 lines) | stat: -rw-r--r-- 539 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
 
test:
	tar xvf DE_results.tar.gz
	gunzip -c transcripts.TMM.fpkm.avg_reps.matrix.gz > transcripts.TMM.fpkm.avg_reps.matrix
	../../Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl transcripts.TMM.fpkm.avg_reps.matrix . > DE_pairwise_summary.txt
	../../Analysis/DifferentialExpression/TissueEnrichment/pairwise_DE_summary_to_DE_classification.pl  DE_pairwise_summary.txt
	touch test

clean:
	rm -f ./*.DE_results
	rm -f ./DE_pairwise_summary.txt*
	rm -f ./transcripts.TMM.fpkm.avg_reps.matrix
	rm -f ./test