1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
git clone --recursive https://github.com/trinityrnaseq/trinityrnaseq.git
#############################
Release info:
curl https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases
## master upgrade to latest devel:
git pull origin devel
git submodule foreach --recursive git checkout master
git submodule foreach --recursive git pull
git submodule foreach --recursive git submodule init
git submodule foreach --recursive git submodule update
#####
Checks before release:
-pombe, mouse, drosoph, k562
-make test_all
-docker: run_test_docker.sh
-singularity: run_ext_test_singularity.sh
-update version string in Trinity
-update Changelog.txt for new version release notes.
git clone --recursive https://github.com/trinityrnaseq/trinityrnaseq.git
Make 2 release tarballs, identical except the latter includes the extended test data.
make clean -i
find . -regex ".*git" -exec rm -rf {} \;
-release naming convention:
release version tag on github: Trinity-v2.8.6
-standard release (extended test data removed)
basedir: trinityrnaseq-v2.8.6
filename: trinityrnaseq-v2.8.6.FULL.tar.gz
-including extended test data
same basedir as above
filename: trinityrnaseq-v2.8.6.FULL_with_extendedTestData.tar.gz
singularity:
copy the simg to gs://trinityrnaseq/Singularity/
add to https://data.broadinstitute.org/Trinity/TRINITY_SINGULARITY/
|
