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trinityrnaseq 2.15.2%2Bdfsg-3
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  • area: main
  • in suites: sid
  • size: 468,012 kB
  • sloc: perl: 49,905; cpp: 17,993; java: 12,489; python: 3,282; sh: 1,989; ansic: 985; makefile: 717; xml: 62

Folder: misc_run_tests

d .. (parent)
- - rwxr-xr-x 1,694 __runMe.diff_kmer_length.sh
- - rwxr-xr-x 574 __runMe.noSeqtk.sh
- - rwxr-xr-x 1,021 __runMe_CuffFly.sh
- - rwxr-xr-x 1,021 __runMe_PasaFly.sh
- - rwxr-xr-x 390 __runMe_as_DS.sh
- - rwxr-xr-x 1,025 __runMe_bowtie_components.sh
- - rwxr-xr-x 550 __runMe_docker.sh
- - rwxr-xr-x 451 __runMe_full_cleanup.sh
- - rwxr-xr-x 659 __runMe_include_long_reads.sh
- - rwxr-xr-x 444 __runMe_no_cleanup.sh
- - rwxr-xr-x 878 __runMe_no_para_iworm.sh
- - rwxr-xr-x 489 __runMe_no_salmon.sh
- - rwxr-xr-x 893 __runMe_no_salmon_no_cleanup.sh
- - rwxr-xr-x 492 __runMe_no_symlinks.sh
- - rwxr-xr-x 1,028 __runMe_parallel_iworm_assembly.sh
- - rwxr-xr-x 1,026 __runMe_piecemeal.sh
- - rwxr-xr-x 475 __runMe_trin_complete.sh
- - rwxr-xr-x 516 __runMe_use_bowtie2.sh
- - rwxr-xr-x 717 __runMe_use_my_ramdisk.sh
- - rwxr-xr-x 769 __runMe_use_workdir.sh
- - rwxr-xr-x 355 __runMe_using_Grid_LSF.sh
- - rwxr-xr-x 374 __runMe_using_Grid_SGE.sh
- - rwxr-xr-x 625 __runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
- - rwxr-xr-x 421 __runMe_using_Grid_uger.sh
- - rwxr-xr-x 939 __runMe_wSuperReads.sh
- - rwxr-xr-x 790 __runMe_w_monitoring.sh
- - rwxr-xr-x 747 __runMe_with_qual_trimming.sh
- - rwxr-xr-x 694 __runMe_with_qual_trimming_and_normalization.sh
- - rwxr-xr-x 1,092 __runMe_with_qual_trimming_and_normalize_libs_separately.sh
- - rwxr-xr-x 239 __run_PE_samples_file.min_kmer_cov_3.sh
- - rwxr-xr-x 190 __run_PE_samples_file.sh
- - rwxr-xr-x 190 __run_SE_samples_file.sh
- - rwxr-xr-x 876 __run_abundance_estimation_include_antisense.sh
- - rwxr-xr-x 1,561 __test_runMe.singleFQ.sh
- - rwxr-xr-x 776 __test_runMe_NO_normalization.sh
- - rw-r--r-- 222 __test_runMe_docker.sh
- - rwxr-xr-x 1,076 __test_runMe_include_normalization.sh
- - rwxr-xr-x 665 __test_runMe_lenient_path_extension.sh
- - rwxr-xr-x 216 __test_runMe_singularity.intra.sh
- - rw-r--r-- 194 __test_runMe_singularity.sh
- - rwxr-xr-x 249 __test_runMe_with_jaccard_clip.sh
- - rwxr-xr-x 540 runMe_no_qualTrim.sh