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#!/usr/bin/env perl
use strict;
use warnings;
my $usage = "usage: $0 file.maps (G|T)\n\n";
my $maps_file = $ARGV[0] or die $usage;
my $GorT = $ARGV[1] or die $usage;
main: {
open (my $fh, $maps_file) or die $!;
while (<$fh>) {
chomp;
my ($genes_info, $asms) = split(/\t/);
my @genes = split(/,/, $genes_info);
foreach my $gene_text (@genes) {
my ($trans,$gene) = split(/;/, $gene_text);
if ($GorT eq "G") {
print "$gene\n";
}
else {
print "$trans\n";
}
}
}
close $fh;
exit(0);
}
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