File: plot_paired_comparisons.Rscript

package info (click to toggle)
trinityrnaseq 2.2.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 212,452 kB
  • ctags: 5,067
  • sloc: perl: 45,552; cpp: 19,678; java: 11,865; sh: 1,485; makefile: 613; ansic: 427; python: 313; xml: 83
file content (14 lines) | stat: -rwxr-xr-x 351 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
 
#!/usr/bin/env Rscript

pdf("pairs.pdf")
data = read.table("combined.TPM.not_cross_norm.matrix")
data = log2(data+1)
c = colnames(data)
log_matrix = data[,grep("log", c)]
pairs(log_matrix)
plateau = data[, grep("plateau", c)]
pairs(plateau)
diauxic = data[, grep("diauxic", c)]
pairs(diauxic)
heatshock = data[, grep("heatshock", c)]
pairs(heatshock)