File: chrys_graph_to_dot.pl

package info (click to toggle)
trinityrnaseq 2.2.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 212,452 kB
  • ctags: 5,067
  • sloc: perl: 45,552; cpp: 19,678; java: 11,865; sh: 1,485; makefile: 613; ansic: 427; python: 313; xml: 83
file content (29 lines) | stat: -rwxr-xr-x 492 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
 
#!/usr/bin/env perl

use strict;
use warnings;

my $usage = "usage: $0 comp.raw.graph\n\n";

my $chrys_graph = $ARGV[0] or die $usage;

main: {

    open (my $fh, $chrys_graph) or die "Error, cannot open file $chrys_graph";
    
    print "digraph G {\n";

    while (<$fh>) {
        chomp;
        my ($id, $prev_id, @rest) = split(/\t/);
        if (defined ($id) && defined($prev_id)) {
            print "    $prev_id->$id\n";
        }
    }
    print "}\n";

    exit(0);
}