File: get_welds_from_chrysals_graphFromFasta_out.pl

package info (click to toggle)
trinityrnaseq 2.2.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 212,452 kB
  • ctags: 5,067
  • sloc: perl: 45,552; cpp: 19,678; java: 11,865; sh: 1,485; makefile: 613; ansic: 427; python: 313; xml: 83
file content (20 lines) | stat: -rwxr-xr-x 391 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
 
#!/usr/bin/env perl

use strict;
use warnings;

while (<>) {
    if (/Welding: >(a\d+;\d+).*to >(a\d+;\d+)/) {
        my $from = $1;
        my $to = $2;
        print join("\t", sort($from, $to)) . "\n";
    }
    elsif (/SCAFFOLD_ACCEPT:\s+(a\d+;\d+)\s+\d+\s+(a\d+;\d+)/) {
        my $from = $1;
        my $to = $2;
        print join("\t", sort($from, $to)) . "\n";
    }
}

exit(0);