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.. (parent) |
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d |
rwxr-xr-x |
83 |
tests
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rwxr-xr-x |
636 |
GG_partitioned_trinity_aggregator.pl
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- |
rwxr-xr-x |
2,050 |
SAM_coordSorted_fragment_Read_coverage_writer.pl
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- |
rwxr-xr-x |
3,237 |
SAM_coordSorted_fragment_coverage_writer2.pl
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- |
rwxr-xr-x |
817 |
SAM_extract_properly_mapped_pairs.pl
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- |
rwxr-xr-x |
1,244 |
SAM_extract_uniquely_mapped_reads.pl
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- |
rwxr-xr-x |
952 |
SAM_filter_out_unmapped_reads.pl
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- |
rwxr-xr-x |
2,585 |
SAM_ordered_pair_jaccard.pl
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- |
rwxr-xr-x |
2,164 |
SAM_set_transcribed_orient_info.pl
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- |
rwxr-xr-x |
1,093 |
SAM_strand_separator.pl
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- |
rwxr-xr-x |
8,603 |
SAM_to_frag_coords.pl
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- |
rwxr-xr-x |
1,314 |
add_LR_reads_to_iworm_bundle.pl
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- |
rwxr-xr-x |
1,584 |
batch_cmds.pl
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- |
rwxr-xr-x |
8,620 |
bowtie2_wrapper.pl
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- |
rwxr-xr-x |
1,286 |
define_SAM_coverage_partitions2.pl
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- |
rwxr-xr-x |
1,391 |
define_coverage_partitions.pl
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- |
rwxr-xr-x |
4,824 |
eXpress_trans_to_gene_results.pl
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- |
rwxr-xr-x |
2,302 |
ensure_coord_sorted_sam.pl
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- |
rwxr-xr-x |
7,042 |
extract_reads_per_partition.pl
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- |
rwxr-xr-x |
3,062 |
fastQ_to_fastA.pl
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- |
rwxr-xr-x |
2,476 |
fastQ_to_tab.pl
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- |
rwxr-xr-x |
712 |
fasta_to_tab.pl
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- |
rwxr-xr-x |
756 |
filter_iworm_by_min_length_or_cov.pl
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- |
rwxr-xr-x |
2,832 |
filter_transcripts_require_min_cov.pl
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- |
rwxr-xr-x |
1,853 |
fragment_coverage_writer.pl
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- |
rwxr-xr-x |
523 |
get_Trinity_gene_to_trans_map.pl
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- |
rwxr-xr-x |
4,425 |
inchworm_transcript_splitter.pl
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- |
rwxr-xr-x |
8,560 |
iworm_LR_to_scaff_pairs.pl
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- |
rwxr-xr-x |
1,825 |
jaccard_fasta_clipper.pl
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- |
rwxr-xr-x |
7,298 |
jaccard_wig_clipper.pl
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- |
rwxr-xr-x |
704 |
join_partitions_within_range.pl
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- |
rwxr-xr-x |
4,613 |
kallisto_trans_to_gene_results.pl
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- |
rwxr-xr-x |
1,073 |
merge_pair_and_LR_scaff_links.pl
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- |
rwxr-xr-x |
3,912 |
nbkc_merge_left_right_stats.pl
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- |
rwxr-xr-x |
2,802 |
nbkc_normalize.pl
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- |
rwxr-xr-x |
18,797 |
ordered_fragment_coords_to_jaccard.pl
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- |
rwxr-xr-x |
1,836 |
outfmt6_add_percent_match_length.pl
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- |
rwxr-xr-x |
6,328 |
partition_chrysalis_graphs_n_reads.pl
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- |
rwxr-xr-x |
847 |
partitioned_trinity_aggregator.pl
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- |
rw-r--r-- |
416 |
plugin_install_tests.sh
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- |
rwxr-xr-x |
5,664 |
prep_rnaseq_alignments_for_genome_assisted_assembly.pl
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- |
rwxr-xr-x |
892 |
print_butterfly_assemblies.pl
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- |
rwxr-xr-x |
1,644 |
process_GMAP_alignments_gff3_chimeras_ok.pl
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- |
rwxr-xr-x |
571 |
revcomp_fasta.pl
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- |
rwxr-xr-x |
5,373 |
run_TMM_scale_matrix.pl
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- |
rwxr-xr-x |
2,606 |
run_UpperQuartileNormalization_matrix.pl
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- |
rwxr-xr-x |
607 |
salmon_runner.pl
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- |
rwxr-xr-x |
5,009 |
salmon_trans_to_gene_results.pl
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- |
rwxr-xr-x |
8,203 |
scaffold_iworm_contigs.pl
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- |
rwxr-xr-x |
2,969 |
segment_GFF_partitions.pl
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- |
rwxr-xr-x |
1,182 |
trinity_install_tests.sh
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- |
rwxr-xr-x |
843 |
trinity_installer.py
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- |
rwxr-xr-x |
1,346 |
wig_clip_to_bed.pl
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- |
rwxr-xr-x |
1,603 |
write_partitioned_trinity_cmds.pl
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