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.. (parent) |
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d |
rwxr-xr-x |
4,096 |
R
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d |
rwxr-xr-x |
4,096 |
TissueEnrichment
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d |
rwxr-xr-x |
4,096 |
cluster_sample_data
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d |
rwxr-xr-x |
4,096 |
pairwise_summaries
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- |
rwxr-xr-x |
1,044 |
DE_graph_to_dot.pl
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- |
rwxr-xr-x |
3,865 |
DTE_to_DTU.pl
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- |
rwxr-xr-x |
2,708 |
GOplot.Rscript
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- |
rwxr-xr-x |
3,167 |
Glimma.Trinity.Rscript
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- |
rwxr-xr-x |
88,878 |
PtR
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- |
rwxr-xr-x |
875 |
ROKU.pl
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- |
rwxr-xr-x |
1,717 |
add_annot_to_trans_id.pl
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- |
rwxr-xr-x |
1,074 |
add_blastx_hit_to_trinity_id.pl
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- |
rwxr-xr-x |
18,674 |
analyze_diff_expr.pl
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- |
rwxr-xr-x |
1,022 |
assign_tissue_specific.pl
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- |
rwxr-xr-x |
5,925 |
compare_gene_trans_DE_ranks.pl
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- |
rwxr-xr-x |
3,815 |
cut_tree_into_clusters.pl
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- |
rwxr-xr-x |
6,762 |
define_clusters_by_cutting_tree.pl
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- |
rwxr-xr-x |
3,911 |
diff_expr_analysis_to_heatmap_html.pl
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rwxr-xr-x |
6,003 |
diff_express.cgi
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- |
rwxr-xr-x |
3,289 |
downsample_count_matrix.pl
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- |
rwxr-xr-x |
3,864 |
extract_GO_enriched_genes.pl
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- |
rwxr-xr-x |
1,043 |
filter_diff_expr.pl
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- |
rwxr-xr-x |
518 |
filter_matrix_min_sum_rowcounts.pl
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- |
rwxr-xr-x |
1,861 |
get_tissue_enriched_DE_one_vs_all.pl
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rwxr-xr-x |
519 |
get_transcript_lengths.pl
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rwxr-xr-x |
6,464 |
identify_diff_isoform_splicing.pl
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- |
rwxr-xr-x |
957 |
log2_transform_matrix.pl
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- |
rwxr-xr-x |
1,068 |
log2_transform_median_center_fpkm_matrix.pl
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- |
rwxr-xr-x |
3,000 |
matrix_to_gene_plots.pl
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- |
rwxr-xr-x |
2,218 |
merge_matrices.pl
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- |
rwxr-xr-x |
494 |
merge_subclusters.pl
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- |
rwxr-xr-x |
932 |
plot_all_DE_MAplots.Rscript
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- |
rwxr-xr-x |
934 |
plot_all_DE_volcanos.Rscript
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rwxr-xr-x |
3,138 |
plot_expression_patterns.pl
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rwxr-xr-x |
239 |
plot_log2FC_hist.Rscript
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rwxr-xr-x |
6,595 |
prep_n_run_GOplot.pl
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rwxr-xr-x |
8,669 |
prune_isoforms_fasta.pl
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rwxr-xr-x |
1,931 |
prune_isoforms_gtf.pl
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rwxr-xr-x |
1,197 |
rank_roku_by_expr.pl
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rwxr-xr-x |
3,364 |
remove_batch_effects_from_count_matrix.pl
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rwxr-xr-x |
1,346 |
rename_matrix_column_labels.pl
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rwxr-xr-x |
1,330 |
rename_matrix_feature_identifiers.pl
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- |
rwxr-xr-x |
4,629 |
replicates_to_sample_averages_matrix.pl
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- |
rwxr-xr-x |
29,332 |
run_DE_analysis.pl
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rwxr-xr-x |
9,762 |
run_GOseq.pl
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rwxr-xr-x |
6,977 |
run_TMM_normalization_write_FPKM_matrix.pl
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rwxr-xr-x |
838 |
stratify_diff_expression.pl
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rwxr-xr-x |
537 |
subcluster_to_canvasXpress_html.make_index_html.pl
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rwxr-xr-x |
3,647 |
subcluster_to_canvasXpress_html.pl
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- |
rwxr-xr-x |
1,430 |
summarize_diff_expr_across_min_threshold_ranges.pl
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rwxr-xr-x |
1,655 |
validate_UP_subset.Rscript
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