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trinityrnaseq 2.6.6+dfsg-6
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 346,416 kB
  • sloc: perl: 47,542; cpp: 20,209; java: 12,484; python: 2,766; sh: 1,665; makefile: 895; ansic: 90; xml: 83

Folder: PerlLib

d .. (parent)
d d rwxr-xr-x 4,096 CDNA
d d rwxr-xr-x 31 CanvasXpress
d d rwxr-xr-x 4,096 KmerGraphLib
d d rwxr-xr-x 46 Simulate
- - rwxr-xr-x 3,657 Ascii_genome_illustrator.pm
- - rw-r--r-- 1,110 BED_utils.pm
- - rwxr-xr-x 5,432 BHStats.pm
- - rw-r--r-- 2,117 CIGAR.pm
- - rw-r--r-- 1,101 CMD_processor.pm
- - rw-r--r-- 687 COMMON.pm
- - rw-r--r-- 2,000 ColorGradient.pm
- - rw-r--r-- 5,322 DelimParser.pm
- - rwxr-xr-x 11,394 EM.pm
- - rwxr-xr-x 6,322 Exons_to_geneobj.pm
- - rwxr-xr-x 4,008 Fasta_reader.pm
- - rwxr-xr-x 1,255 Fasta_retriever.pm
- - rwxr-xr-x 3,348 Fastq_reader.pm
- - rwxr-xr-x 3,302 GFF3_alignment_utils.pm
- - rwxr-xr-x 8,383 GFF3_utils.pm
- - rwxr-xr-x 2,163 GFF_maker.pm
- - rw-r--r-- 128,211 GTF.pm
- - rw-r--r-- 4,459 GTF_utils.pm
- - rwxr-xr-x 141,644 Gene_obj.pm
- - rwxr-xr-x 1,362 Gene_obj_indexer.pm
- - rw-r--r-- 2,516 Ktree.pm
- - rwxr-xr-x 9,733 Longest_orf.pm
- - rwxr-xr-x 10,298 Nuc_translator.pm
- - rw-r--r-- 6,689 Overlap_info.pm
- - rwxr-xr-x 4,430 Overlap_piler.pm
- - rwxr-xr-x 5,204 PSL_parser.pm
- - rw-r--r-- 4,782 Pipeliner.pm
- - rw-r--r-- 485 Process_cmd.pm
- - rw-r--r-- 11,060 SAM_entry.pm
- - rw-r--r-- 1,625 SAM_reader.pm
- - rwxr-xr-x 1,902 SingleLinkageClusterer.pm
- - rw-r--r-- 6,016 Thread_helper.pm
- - rwxr-xr-x 3,707 TiedHash.pm
- - rw-r--r-- 2,742 VCF_parser.pm
- - rwxr-xr-x 3,769 WigParser.pm
- - rwxr-xr-x 1,139 overlapping_nucs.ph
- - rwxr-xr-x 597 test_Fasta_retriever.pl
- - rwxr-xr-x 523 test_htc_gridrunner_LSF.pl
- - rwxr-xr-x 562 test_htc_gridrunner_SGE.pl