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trinityrnaseq 2.6.6+dfsg-6
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trinityrnaseq (2.6.6+dfsg-6) unstable; urgency=medium

  * -examples: Don't hardcode number of --CPU (especially above 2). Fixes the
    autopkgtests when the number of CPUs/cores is less than 4 and blastn's
    intransigency to accept a larger value to -num_threads.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 04 Jan 2019 03:38:40 -0800

trinityrnaseq (2.6.6+dfsg-5) unstable; urgency=medium

  * Added missing dependency on ncbi-blast+ to the binary package.

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 03 Jan 2019 01:15:29 -0800

trinityrnaseq (2.6.6+dfsg-4) unstable; urgency=medium

  * Default to Python 3, as needed.
  * Use better Java version check from upstream

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Wed, 02 Jan 2019 00:48:52 -0800

trinityrnaseq (2.6.6+dfsg-3) unstable; urgency=medium

  * debian/control: add numpy dependency, required for
    Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Tue, 01 Jan 2019 08:34:35 -0800

trinityrnaseq (2.6.6+dfsg-2) unstable; urgency=medium

  * debian/trinityrnaseq.install: Add BubbleUpClustering binary

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 31 Dec 2018 15:30:16 -0800

trinityrnaseq (2.6.6+dfsg-1) unstable; urgency=medium

  * Team upload.

  [ Michael R. Crusoe ]
  * New upstream release, now with the sample data returned
    Closes: #897877
  * Build and ship seqtk-trinity

  [ Andreas Tille ]
  * debhelper 11
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.2.1
  * Secure URI in copyright format
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Remove trailing whitespace in debian/changelog
  * Remove trailing whitespace in debian/copyright
  * Fix permissions and Perl interpreter path

 -- Andreas Tille <tille@debian.org>  Fri, 14 Dec 2018 08:58:49 +0100

trinityrnaseq (2.5.1+dfsg-2) unstable; urgency=medium

  * Team upload.

  [ Aurelien Jarno ]
  * Build with glibc 2.27 (fix for cannot find -lieee)

 -- Andreas Tille <tille@debian.org>  Sat, 17 Feb 2018 09:04:18 +0100

trinityrnaseq (2.5.1+dfsg-1) unstable; urgency=medium

  * New upstream release. Updated watch file.
  * NeedlemanWunschGotohBanded.java moved into trinityrnasq_jaligner package
  * Much of the sample data is missing from upstream's tarball, so some tests
    have been turned off

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 11 Feb 2018 09:13:04 -0800

trinityrnaseq (2.2.0+dfsg-4) unstable; urgency=medium

  [ Steffen Moeller ]
  * debian/upstream/metadata
    - Completed references to registries
    - yamllint clean
  * debian/copyright
    - Corrected upstream-name to 'Trinity'

  [ Michael R. Crusoe ]
  * Removed unneeded dependency on r-bioc-edger

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 18 Nov 2017 05:00:08 -0800

trinityrnaseq (2.2.0+dfsg-3) unstable; urgency=medium

  * Team upload

  [ Gert Wollny ]
  * Fix build gcc 7
    Closes: #853687

  [ Andreas Tille ]
  * debhelper 10
    Closes: #865262
  * Standards-Version: 4.1.0 (no changes needed)
  * hardening=+all
  * remove unused lintian override
  * Build-Depends: bowtie2, yellyfish
    Closes: #860645

 -- Andreas Tille <tille@debian.org>  Fri, 01 Sep 2017 21:57:01 +0200

trinityrnaseq (2.2.0+dfsg-2) unstable; urgency=medium

  * Team upload.
  * Fix build on GCC 6 (Closes: #831110)

 -- Sascha Steinbiss <satta@debian.org>  Fri, 05 Aug 2016 19:21:49 +0000

trinityrnaseq (2.2.0+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Team upload
  * d/watch: Use xz compression for upstream source

  [ Michael R. Crusoe ]
  * new upstream version
  * prune d/copyright excludes
  * refresh patches, drop a few included upstream
  * Standards-Version: '3.9.7' -> '3.9.8'

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 23 May 2016 11:46:45 -0700

trinityrnaseq (2.1.1+dfsg2-1) unstable; urgency=low

  * Properly harden Chrysalis binaries
  * Drop Galaxy plugin
  * Increment dfsg version for the above

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Thu, 25 Feb 2016 00:03:48 -0800

trinityrnaseq (2.1.1+dfsg-2) unstable; urgency=medium

  * Split install of arch-dependent & arch-independent files, fixes FTBFS
    (Closes: #813958)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sun, 07 Feb 2016 01:21:41 -0800

trinityrnaseq (2.1.1+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #777697)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Thu, 22 Oct 2015 08:31:56 -0700