File: __test_runMe_docker.sh

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trinityrnaseq 2.6.6%2Bdfsg-6
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CPU=$(nproc || sysctl -n hw.physicalcpu)

docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity --seqType fq --single `pwd`/reads.left.fq.gz  --max_memory 1G --CPU ${CPU} --output `pwd`/trinity_out_dir_docker