File: KCores.cpp

package info (click to toggle)
tulip 4.6.0dfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 139,284 kB
  • ctags: 35,942
  • sloc: cpp: 289,758; ansic: 27,264; python: 1,256; sh: 923; yacc: 522; xml: 337; makefile: 258; php: 66; lex: 55
file content (239 lines) | stat: -rw-r--r-- 7,802 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
/**
 *
 * This file is part of Tulip (www.tulip-software.org)
 *
 * Authors: David Auber and the Tulip development Team
 * from LaBRI, University of Bordeaux
 *
 * Tulip is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *
 * Tulip is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
 * See the GNU General Public License for more details.
 *
 */
#include <tulip/TulipPluginHeaders.h>
#include <tulip/StringCollection.h>

using namespace std;
using namespace tlp;

/** \addtogroup metric */
/*@{*/
/**
 * \file
 * \brief A metric based on the K-core decomposition of a graph.
 *
 * K-cores were first introduced in:
 *
 * S. B. Seidman, "Network structure and minimum degree",
 * Social Networks 5:269-287, 1983
 *
 * This is a method of simplifying graph topology to aid in analysis
 * and visualization of social networks
 *
 * (see http://en.wikipedia.org/wiki/K-core for more details)
 *
 * The K-Cores metric can also be computed according to weighted degrees. See :
 *
 * C. Giatsidis, D. Thilikos, M. Vazirgiannis, \n
 * "Evaluating cooperation in communities with the k-core structure",\n
 * "Proceedings of the 2011 International Conference on Advances in Social Networks Analysis and Mining (ASONAM)",\n
 * "2011"
 *
 * \note Use the default parameters to compute simple K-Cores (undirected and unweighted)
 *
 *  <b>HISTORY</b>
 *
 *  - 2006 Version 1.0 by David Auber, LaBRI,
 *  University Bordeaux I, France
 *  - 2011 Version 2.0: Add In/Out and Weighted computation features
 *  by François Queyroi, LaBRI, University Bordeaux I, France
 *
 *  <b>LICENCE</b>
 *
 *  This program is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 */
class KCores:public tlp::DoubleAlgorithm {
public:

  PLUGININFORMATION("K-Cores", "David Auber","28/05/2006","Nodes measure<br/>often used to evaluate the structure of social networks.","2.0", "Graph")

  KCores(const tlp::PluginContext *context);
  ~KCores();
  bool run();
private:
  bool peel(tlp::Graph* subgraph, tlp::NumericProperty* metric,
            tlp::DoubleProperty&);
  bool peelIn(tlp::Graph* subgraph, tlp::NumericProperty* metric,
              tlp::DoubleProperty&);
  bool peelOut(tlp::Graph* subgraph, tlp::NumericProperty* metric,
               tlp::DoubleProperty&);
};

//========================================================================================
namespace {
const char * paramHelp[] = {
  //direction
  HTML_HELP_OPEN()         \
  HTML_HELP_DEF( "type", "String Collection" ) \
  HTML_HELP_DEF( "default", "InOut" )  \
  HTML_HELP_BODY() \
  "This parameter indicates the direction used to compute K-Cores values."  \
  HTML_HELP_CLOSE(),
  // metric
  HTML_HELP_OPEN()              \
  HTML_HELP_DEF( "type", "NumericProperty" )       \
  HTML_HELP_DEF( "value", "An existing edge metric" )   \
  HTML_HELP_BODY()              \
  "An existing edge metric property"\
  HTML_HELP_CLOSE()
};
}
#define DEGREE_TYPE "type"
#define DEGREE_TYPES "InOut;In;Out;"
#define INOUT 0
#define IN 1
#define OUT 2
//========================================================================================
KCores::KCores(const PluginContext *context):DoubleAlgorithm(context) {
  addInParameter<StringCollection>(DEGREE_TYPE, paramHelp[0], DEGREE_TYPES);
  addInParameter<NumericProperty*>("metric",paramHelp[1],"",false);
  addDependency("Degree","1.0");
}
//========================================================================================
KCores::~KCores() {}
//========================================================================================
bool KCores::peel(Graph* subgraph, NumericProperty* metric,
                  DoubleProperty& wdeg) {
  double k= wdeg.getNodeMin();
  bool modify = true;
  bool onePeel = false;

  while (modify) {
    modify = false;
    node n;
    stableForEach(n,subgraph->getNodes()) {
      if (wdeg.getNodeValue(n) <= k) { //Remove n and decrease its In/Out-neighbors' degree
        result->setNodeValue(n, k);
        edge ee;
        forEach(ee,subgraph->getInOutEdges(n)) {
          node m = subgraph->opposite(ee,n);
          wdeg.setNodeValue(m, wdeg.getNodeValue(m)-(metric ? metric->getEdgeDoubleValue(ee) : 1.0));
        }
        subgraph->delNode(n);
        modify = true;
        onePeel = true;
      }
    }
  }

  return onePeel;
}
//========================================================================================
bool KCores::peelIn(Graph* subgraph, NumericProperty* metric,
                    DoubleProperty& wdeg) {
  double k= wdeg.getNodeMin();
  bool modify = true;
  bool onePeel = false;

  while (modify) {
    modify = false;
    node n;
    stableForEach(n,subgraph->getNodes()) {
      if (wdeg.getNodeValue(n) <= k) {//Remove n and decrease its Out-neighbors' degree
        result->setNodeValue(n, k);
        edge ee;
        forEach(ee,subgraph->getOutEdges(n)) {
          node m = subgraph->opposite(ee,n);
          wdeg.setNodeValue(m, wdeg.getNodeValue(m)- (metric ? metric->getEdgeDoubleValue(ee) : 1.0));
        }
        subgraph->delNode(n);
        modify = true;
        onePeel = true;
      }
    }
  }

  return onePeel;
}
//========================================================================================
bool KCores::peelOut(Graph* subgraph, NumericProperty* metric,
                     DoubleProperty& wdeg) {
  double k= wdeg.getNodeMin();
  bool modify = true;
  bool onePeel = false;

  while (modify) {
    modify = false;
    node n;
    stableForEach(n,subgraph->getNodes()) {
      if (wdeg.getNodeValue(n) <= k) { //Remove n and decrease its In-neighbors' degree
        result->setNodeValue(n, k);
        edge ee;
        forEach(ee,subgraph->getInEdges(n)) {
          node m = subgraph->opposite(ee,n);
          wdeg.setNodeValue(m, wdeg.getNodeValue(m)- (metric ? metric->getEdgeDoubleValue(ee) : 1.0));
        }
        subgraph->delNode(n);
        modify = true;
        onePeel = true;
      }
    }
  }

  return onePeel;
}
//========================================================================================
bool KCores::run() {
  NumericProperty* metric = NULL;
  StringCollection degreeTypes(DEGREE_TYPES);
  degreeTypes.setCurrent(0);

  if (dataSet!=NULL) {
    dataSet->get(DEGREE_TYPE, degreeTypes);
    dataSet->get("metric", metric);
  }

  Graph* subgraph = graph->addCloneSubGraph();
  DoubleProperty wdeg(subgraph);
  string errMsg="";
  subgraph->applyPropertyAlgorithm("Degree",&wdeg,errMsg,pluginProgress,dataSet);

  switch(degreeTypes.getCurrent()) {
  case INOUT:

    while (subgraph->numberOfNodes()>0)
      peel(subgraph, metric, wdeg);

    break;

  case IN:

    while (subgraph->numberOfNodes()>0)
      peelIn(subgraph, metric, wdeg);

    break;

  case OUT:

    while (subgraph->numberOfNodes()>0)
      peelOut(subgraph, metric, wdeg);

    break;
  }

  graph->delSubGraph(subgraph);
  return true;
}
//========================================================================================
PLUGIN(KCores)
//========================================================================================