File: QuotientClustering.cpp

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/**
 *
 * This file is part of Tulip (www.tulip-software.org)
 *
 * Authors: David Auber and the Tulip development Team
 * from LaBRI, University of Bordeaux
 *
 * Tulip is free software; you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *
 * Tulip is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
 * See the GNU General Public License for more details.
 *
 */

#include <tulip/GraphProperty.h>
#include <tulip/StringCollection.h>
#include <tulip/Algorithm.h>
#include <tulip/IntegerProperty.h>
#include <tulip/StringProperty.h>
#include <tulip/DoubleProperty.h>
#include <tulip/LayoutProperty.h>
#include <tulip/SizeProperty.h>

using namespace std;
using namespace tlp;

//==============================================================================
namespace {
const char * paramHelp[] = {
  // oriented
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "true" ) \
  HTML_HELP_BODY() \
  "If true, the graph is considered oriented." \
  HTML_HELP_CLOSE(),
  // recursive
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "false" ) \
  HTML_HELP_BODY() \
  "If true, the algorithm is applied along the entire hierarchy of subgraphs." \
  HTML_HELP_CLOSE(),
  // node aggregation function
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "String Collection" ) \
  HTML_HELP_DEF( "default", "none" )   \
  HTML_HELP_BODY() \
  "Function used to compute a measure value for a meta-node using the values of its underlying nodes. If 'none', no value is be computed." \
  HTML_HELP_CLOSE(),
  // edge aggregation function
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "String Collection" ) \
  HTML_HELP_DEF( "default", "none" )   \
  HTML_HELP_BODY() \
  "Function used to compute a measure value for a meta-edge using the values of its underlying edges. If 'none', no value is computed." \
  HTML_HELP_CLOSE(),
  // meta-node label
  HTML_HELP_OPEN()              \
  HTML_HELP_DEF( "type", "StringProperty" )       \
  HTML_HELP_DEF( "value", "An existing string property" )   \
  HTML_HELP_BODY()              \
  "Property used to label meta-nodes. An arbitrary underlying node is chosen and its associated value for the given property becomes the meta-node label."\
  HTML_HELP_CLOSE(),
  // use name of subgraphs
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "false" ) \
  HTML_HELP_BODY() \
  "If true, the meta-node label is the same as the name of the subgraph it represents." \
  HTML_HELP_CLOSE(),
  // edge cardinality
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "false" ) \
  HTML_HELP_BODY() \
  "If true, the property edgeCardinality is created for each meta-edge of the quotient graph (and store the number of edges it represents)." \
  HTML_HELP_CLOSE(),
  // layout quotient graph
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "false" ) \
  HTML_HELP_BODY() \
  "If true, a force directed layout is computed for each quotient graphs." \
  HTML_HELP_CLOSE(),
  // layout clusters graphs
  HTML_HELP_OPEN() \
  HTML_HELP_DEF( "type", "bool" ) \
  HTML_HELP_DEF( "values", "[true, false]" ) \
  HTML_HELP_DEF( "default", "false" ) \
  HTML_HELP_BODY() \
  "If true, a force directed layout is computed for each clusters graphs." \
  HTML_HELP_CLOSE(),
};
}

//===============================================================================
// define a specific calculator for viewLabel
class QuotientLabelCalculator :public AbstractStringProperty::MetaValueCalculator {
  StringProperty* sgLabel;
  bool useSubGraphName;
public:
  QuotientLabelCalculator(StringProperty* label, bool useSgName)
    : AbstractStringProperty::MetaValueCalculator(),
      sgLabel(label), useSubGraphName(useSgName) {}

  void computeMetaValue(AbstractStringProperty* label, node mN, Graph* sg,
                        Graph*) {
    if (sgLabel)
      label->setNodeValue(mN, sgLabel->getNodeValue(sg->getOneNode()));
    else if (useSubGraphName) {
      string name;
      sg->getAttribute("name", name);
      label->setNodeValue(mN, name);
    }
  }
};

// define a specific calculator for edgeCardinality
class EdgeCardinalityCalculator :public IntegerMinMaxProperty::MetaValueCalculator {
public:
  void computeMetaValue(AbstractProperty<IntegerType, IntegerType, NumericProperty>* card,
                        edge mE, Iterator<edge>* itE, Graph*) {
    unsigned int nbEdges = 0;

    while(itE->hasNext()) {
      itE->next();
      ++nbEdges;
    }

    card->setEdgeValue(mE, nbEdges);
  }
};


#define AGGREGATION_FUNCTIONS "none;average;sum;max;min"
class QuotientClustering:public tlp::Algorithm {
public:
  PLUGININFORMATION("Quotient Clustering","David Auber","13/06/2001","Computes a quotient sub-graph<br/>(meta-nodes pointing on sub-graphs)<br/>using an already existing sub-graphs hierarchy.","1.4", "Clustering")
//================================================================================
  QuotientClustering(PluginContext* context):Algorithm(context) {
    addDependency("FM^3 (OGDF)", "1.2");
    addDependency("Auto Sizing", "1.0");
    addInParameter<bool>("oriented", paramHelp[0], "true");
    addInParameter<StringCollection>("node function", paramHelp[2], AGGREGATION_FUNCTIONS);
    addInParameter<StringCollection>("edge function", paramHelp[3], AGGREGATION_FUNCTIONS);
    addInParameter<StringProperty>("meta-node label", paramHelp[4], "", false);
    addInParameter<bool>("use name of subgraph", paramHelp[5], "false");
    addInParameter<bool>("recursive", paramHelp[1], "false");
    addInParameter<bool>("layout quotient graph(s)", paramHelp[7], "false");
    addInParameter<bool>("layout clusters", paramHelp[8], "false");
    addInParameter<bool>("edge cardinality", paramHelp[6], "false");
  }

  //===============================================================================
  bool run() {
    bool oriented = true, edgeCardinality = true, clustersLayout = false;
    bool recursive = false, quotientLayout = true, useSubGraphName = false;
    StringProperty *metaLabel = NULL;
    StringCollection nodeFunctions(AGGREGATION_FUNCTIONS);
    nodeFunctions.setCurrent(0);
    StringCollection edgeFunctions(AGGREGATION_FUNCTIONS);
    edgeFunctions.setCurrent(0);

    if (dataSet!=NULL) {
      dataSet->get("oriented", oriented);
      dataSet->get("node function", nodeFunctions);
      dataSet->get("edge function", edgeFunctions);
      dataSet->get("edge cardinality", edgeCardinality);
      dataSet->get("recursive", recursive);
      dataSet->get("meta-node label", metaLabel);
      dataSet->get("use name of subgraph", useSubGraphName);
      dataSet->get("layout quotient graph(s)", quotientLayout);
      dataSet->get("layout clusters", clustersLayout);
    }

    Iterator<Graph *> *itS= graph->getSubGraphs();

    // do nothing if there is no subgraph
    if (!itS->hasNext()) {
      delete itS;
      return true;
    }

    delete itS;

    string layoutName = "FM^3 (OGDF)";
    string errMsg;

    if (clustersLayout) {
      tlp::Graph *cluster = NULL;
      forEach(cluster, graph->getSubGraphs()) {
        cluster->applyPropertyAlgorithm(layoutName, cluster->getLocalProperty<LayoutProperty>("viewLayout"), errMsg);
      }
    }

    IntegerProperty *opProp = NULL, *cardProp = NULL;
    Graph *quotientGraph = graph->getRoot()->addSubGraph();
    stringstream sstr;
    sstr << "quotient of ";
    string graphName;
    graph->getAttribute("name", graphName);

    if (graphName.size() == 0)
      sstr << graph->getId();
    else {
      sstr << graphName;

      if (graphName == "unnamed")
        sstr << " " << graph->getId();
    }

    quotientGraph->setAttribute(string("name"), sstr.str());

    if (!oriented) {
      opProp = new IntegerProperty(quotientGraph);
      opProp->setAllEdgeValue(edge().id);
    }

    EdgeCardinalityCalculator cardCalc;

    if (edgeCardinality) {
      cardProp = quotientGraph->getLocalProperty<IntegerProperty>("edgeCardinality");
      cardProp->setMetaValueCalculator(&cardCalc);
    }

    // set specific meta value calculators
    // for most properties
    DoubleProperty::PredefinedMetaValueCalculator nodeFn =
      (DoubleProperty::PredefinedMetaValueCalculator ) nodeFunctions.getCurrent();
    DoubleProperty::PredefinedMetaValueCalculator edgeFn =
      (DoubleProperty::PredefinedMetaValueCalculator) edgeFunctions.getCurrent();
    QuotientLabelCalculator viewLabelCalc(metaLabel, useSubGraphName);
    TLP_HASH_MAP<PropertyInterface*, PropertyInterface::MetaValueCalculator *> prevCalcs;
    string pName;
    forEach(pName, quotientGraph->getProperties()) {
      PropertyInterface *prop = quotientGraph->getProperty(pName);

      //do nothing for viewBorderWidth
      if(pName == "viewBorderWidth")
        continue;

      if (dynamic_cast<DoubleProperty *>(prop)) {
        prevCalcs[prop] = prop->getMetaValueCalculator();
        ((DoubleProperty *)prop)->setMetaValueCalculator(nodeFn, edgeFn);
      }

      if (pName == "viewLabel") {
        prevCalcs[prop] = prop->getMetaValueCalculator();
        ((StringProperty*) prop)->setMetaValueCalculator(&viewLabelCalc);
      }
    }
    // compute meta nodes, edges and associated meta values
    itS = graph->getSubGraphs();
    vector<node> mNodes;
    graph->createMetaNodes(itS, quotientGraph, mNodes);
    delete itS;

    // restore previous calculators
    TLP_HASH_MAP<PropertyInterface*, PropertyInterface::MetaValueCalculator *>::iterator itC =
      prevCalcs.begin();

    while(itC != prevCalcs.end()) {
      ((*itC).first)->setMetaValueCalculator((*itC).second);
      ++itC;
    }

    GraphProperty *metaInfo =
      graph->getRoot()->getProperty<GraphProperty>("viewMetaGraph");

    // orientation
    if (!oriented) {
      // for each edge
      // store opposite edge in opProp
      edge mE;
      forEach(mE, quotientGraph->getEdges()) {
        const std::pair<node, node>& eEnds = quotientGraph->ends(mE);
        edge op = quotientGraph->existEdge(eEnds.second, eEnds.first);

        if (op.isValid()) {
          opProp->setEdgeValue(op, mE.id);
          opProp->setEdgeValue(mE, op.id);
        }
      }
      set<edge> edgesToDel;
      DoubleProperty* viewMetric =
        quotientGraph->getProperty<DoubleProperty>("viewMetric");
      Iterator<edge>* itE = quotientGraph->getEdges();

      while (itE->hasNext()) {
        edge mE = itE->next();
        edge op(opProp->getEdgeValue(mE));

        if (op.isValid() &&
            edgesToDel.find(mE) == edgesToDel.end() &&
            edgesToDel.find(op) == edgesToDel.end()) {
          // if the opposite edge viewMetric associated value is greater
          // than the mE associated value than we will keep it instead of mE
          bool opOK =
            viewMetric->getEdgeValue(mE) < viewMetric->getEdgeValue(op);

          if (edgeFn != DoubleProperty::NO_CALC) {
            forEach(pName, graph->getProperties()) {
              PropertyInterface *property = graph->getProperty(pName);

              if (dynamic_cast<DoubleProperty *>(property) &&
                  // try to avoid view... properties
                  (pName.compare(0, 4, "view") != 0 || pName == "viewMetric")) {
                DoubleProperty *metric = graph->getProperty<DoubleProperty>(pName);
                double value = metric->getEdgeValue(mE);

                switch(edgeFn) {
                case DoubleProperty::AVG_CALC:
                  value = (value + metric->getEdgeValue(op))/2;
                  break;

                case DoubleProperty::SUM_CALC:
                  value += metric->getEdgeValue(op);
                  break;

                case DoubleProperty::MAX_CALC:

                  if (value < metric->getEdgeValue(op))
                    value = metric->getEdgeValue(op);

                  break;

                case DoubleProperty::MIN_CALC:

                  if (value > metric->getEdgeValue(op))
                    value = metric->getEdgeValue(op);

                  break;

                case DoubleProperty::NO_CALC:
                  break;
                }

                if (opOK)
                  metric->setEdgeValue(op, value);
                else
                  metric->setEdgeValue(mE, value);
              }
            }
          }

          // compute cardinaly if needed
          if (cardProp) {
            unsigned int card =
              cardProp->getEdgeValue(mE) + cardProp->getEdgeValue(op);

            if (opOK)
              cardProp->setEdgeValue(op, card);
            else
              cardProp->setEdgeValue(mE, card);
          }

          // insert one of the opposite meta edges in edgesToDel
          // and insert its undelying edges in the set of the remaining one
          edge meToKeep(mE.id), meToDel(op.id);

          if (opOK)
            meToKeep = op, meToDel = mE;

          edgesToDel.insert(meToDel);
          set<edge> se = metaInfo->getEdgeValue(meToKeep);
          const set<edge>& nse = metaInfo->getEdgeValue(meToDel);
          set<edge>::const_iterator itnse;

          for(itnse = nse.begin(); itnse != nse.end(); ++itnse)
            se.insert(*itnse);

          metaInfo->setEdgeValue(meToKeep, se);
        }
      }

      delete itE;
      set<edge>::const_iterator it;

      for ( it = edgesToDel.begin(); it!=edgesToDel.end(); ++it)
        quotientGraph->delEdge(*it);
    }

    if (opProp)
      delete opProp;

    if (dataSet!=NULL) {
      dataSet->set("quotientGraph", quotientGraph);
    }

    // layouting if needed
    if (quotientLayout) {
      string sizesName = "Auto Sizing";
      quotientGraph->applyPropertyAlgorithm(layoutName, quotientGraph->getLocalProperty<LayoutProperty>("viewLayout"), errMsg);
      quotientGraph->applyPropertyAlgorithm(sizesName, quotientGraph->getLocalProperty<SizeProperty>("viewSize"),errMsg);
    }

    // recursive call if needed
    if (recursive) {
      DataSet dSet;
      dSet.set("oriented", oriented);
      dSet.set("node function", nodeFunctions);
      dSet.set("edge function", edgeFunctions);
      dSet.set("edge cardinality", edgeCardinality);
      dSet.set("recursive", recursive);
      dSet.set("meta-node label", metaLabel);
      dSet.set("use name of subgraph", useSubGraphName);
      dSet.set("layout quotient graph(s)", quotientLayout);
      vector<node>::iterator itn = mNodes.begin();

      while(itn != mNodes.end()) {
        node mn = *itn;
        Graph* sg = quotientGraph->getNodeMetaInfo(mn);
        string eMsg;
        sg->applyAlgorithm("Quotient Clustering", eMsg, &dSet, pluginProgress);

        // if a quotient graph has been computed
        // update metaInfo of current meta node
        if (dSet.getAndFree("quotientGraph", sg))
          metaInfo->setNodeValue(mn, sg);

        ++itn;
      }
    }

    return true;
  }
};

PLUGIN(QuotientClustering)