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"This module contains a collection of common utilities."
# Copyright (C) 2008-2011 Martin Sandve Alnes and Anders Logg
#
# This file is part of UFL.
#
# UFL is free software: you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# UFL is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with UFL. If not, see <http://www.gnu.org/licenses/>.
#
# Modified by Kristian Oelgaard, 2009
#
# First added: 2008-08-05
# Last changed: 2011-06-02
import os
from itertools import izip
import operator
# Taken from http://ivory.idyll.org/blog/mar-07/replacing-commands-with-subprocess
from subprocess import Popen, PIPE, STDOUT
def get_status_output(cmd, input=None, cwd=None, env=None):
pipe = Popen(cmd, shell=True, cwd=cwd, env=env, stdout=PIPE, stderr=STDOUT)
(output, errout) = pipe.communicate(input=input)
assert not errout
status = pipe.returncode
return (status, output)
def write_file(filename, text):
f = open(filename, "w")
f.write(text)
f.close()
def pdflatex(latexfilename, pdffilename, flags): # TODO: Options for this.
"Execute pdflatex to compile a latex file into pdf."
flags = "-file-line-error-style -interaction=nonstopmode"
latexcmd = "pdflatex"
cmd = "%s %s %s %s" % (latexcmd, flags, latexfilename, pdffilename)
s, o = get_status_output(cmd)
def openpdf(pdffilename):
"Open PDF file in external pdf viewer."
reader_cmd = "evince %s &" # TODO: Add option for which reader to use. Is there a portable way to do this? Like "get default pdf reader from os"?
cmd = reader_cmd % pdffilename
s, o = get_status_output(cmd)
def product(sequence):
"Return the product of all elements in a sequence."
return reduce(operator.__mul__, sequence, 1)
def mergedicts(dicts):
d = dict(dicts[0])
for d2 in dicts[1:]:
d.update(d2)
return d
def subdict(superdict, keys):
return dict((k, superdict[k]) for k in keys)
def unzip(seq):
"Inverse operation of zip: unzip(zip(a, b)) == (a, b)"
return [s[0] for s in seq], [s[1] for s in seq]
def xor(a, b):
return bool(a) if b else not a
def or_tuples(seqa, seqb):
"Return 'or' of all pairs in two sequences of same length."
return tuple(a or b for (a,b) in izip(seqa, seqb))
def and_tuples(seqa, seqb):
"Return 'and' of all pairs in two sequences of same length."
return tuple(a and b for (a,b) in izip(seqa, seqb))
def iter_tree(tree):
"""Iterate over all nodes in a tree represented
by lists of lists of leaves."""
if isinstance(tree, list):
for node in tree:
for i in iter_tree(node):
yield i
else:
yield tree
def split_dict(d, criteria):
"Split a dict d into two dicts based on a criteria on the keys."
a = {}
b = {}
for (k,v) in d.iteritems():
if criteria(k):
a[k] = v
else:
b[k] = v
return a, b
def slice_dict(dictionary, keys, default=None):
return tuple(dictionary.get(k, default) for k in keys)
def some_key(a_dict):
"Return an arbitrary key from a dictionary."
return zip((0,), a_dict.iterkeys())[0][1]
def camel2underscore(name):
"Convert a CamelCaps string to underscore_syntax."
letters = []
lastlower = False
for l in name:
thislower = l.islower()
if not thislower:
# Don't insert _ between multiple upper case letters
if lastlower:
letters.append("_")
l = l.lower()
lastlower = thislower
letters.append(l)
return "".join(letters)
def lstr(l):
"Pretty-print list or tuple, invoking str() on items instead of repr() like str() does."
if isinstance(l, list):
return "[" + ", ".join(lstr(item) for item in l) + "]"
elif isinstance(l, tuple):
return "(" + ", ".join(lstr(item) for item in l) + ")"
return str(l)
def dstr(d, colsize=80):
"Pretty-print dictionary of key-value pairs."
sorted_keys = sorted(d.keys())
return tstr([(key, d[key]) for key in sorted_keys], colsize)
def tstr(t, colsize=80):
"Pretty-print list of tuples of key-value pairs."
if not t:
return ""
# Compute maximum key length
keylen = max([len(str(k)) for (k,v) in t])
# Key-length cannot be larger than colsize
if keylen > colsize:
return str(t)
# Pretty-print table
s = ""
for (key, value) in t:
key = str(key)
if isinstance(value, str):
value = "'%s'" % value
else:
value = str(value)
s += key + ":" + " "*(keylen - len(key) + 1)
space = ""
while len(value) > 0:
end = min(len(value), colsize - keylen)
s += space + value[:end] + "\n"
value = value[end:]
space = " "*(keylen + 2)
return s
def sstr(s):
"Pretty-print set."
return ", ".join(str(x) for x in s)
def istr(o):
"Format object as string, inserting ? for None."
if o is None:
return "?"
else:
return str(o)
def estr(elements):
"Format list of elements for printing."
return ", ".join(e.shortstr() for e in elements)
class Counted(object):
"""A superclass for classes of objects identified by a global counter.
Intended to be inherited to provide consistent counting logic. Usage:
1. Inherit this class
2. Declare a static class _globalcount variable in your subclass:
3. Call Counted.__init__ at initialization.
Minimal example:
.. code-block:: python
class MyClass(Counted):
_globalcount = 0
def __init__(self):
Counted.__init__(self)
If MyClass is further inherited, each subclass may get a
different global counter, causing problems. Therefore
it is recommended to pass the class to hold the global
counter as an argument to Counted.__init__ like this:
.. code-block:: python
class MyClass(Counted):
_globalcount = 0
def __init__(self):
Counted.__init__(self, count=None, countedclass=MyClass)
class OtherClass(MyClass):
def __init__(self):
MyClass.__init__(self)
"""
def __init__(self, count = None, countedclass = None):
if countedclass is None:
countedclass = type(self)
self._countedclass = countedclass
if count is None:
self._count = self._countedclass._globalcount
self._countedclass._globalcount += 1
else:
self._count = count
if count >= self._countedclass._globalcount:
self._countedclass._globalcount = count + 1
def count(self):
return self._count
class Stack(list):
"A stack datastructure."
def __init__(self, *args):
list.__init__(self, *args)
def push(self, v):
list.append(self, v)
def peek(self):
return self[-1]
class StackDict(dict):
"A dict that can be changed incrementally with 'd.push(k,v)' and have changes rolled back with 'k,v = d.pop()'."
def __init__(self, *args, **kwargs):
dict.__init__(self, *args, **kwargs)
self._l = []
def push(self, k, v):
# Store previous state for this key
self._l.append((k, self.get(k, None)))
if v is None:
if k in self:
del self[k]
else:
self[k] = v
def pop(self):
# Restore previous state for this key
k, v = self._l.pop()
if v is None:
if k in self:
del self[k]
else:
self[k] = v
return k, v
class UFLTypeDict(dict):
def __init__(self):
dict.__init__(self)
def __getitem__(self, key):
return dict.__getitem__(self, key._uflclass)
def __setitem__(self, key, value):
return dict.__setitem__(self, key._uflclass, value)
def __delitem__(self, key):
return dict.__delitem__(self, key._uflclass)
def __contains__(self, key):
return dict.__contains__(self, key._uflclass)
class UFLTypeDefaultDict(dict):
def __init__(self, default):
dict.__init__(self)
def make_default():
return default
self.setdefault(make_default)
def __getitem__(self, key):
return dict.__getitem__(self, key._uflclass)
def __setitem__(self, key, value):
return dict.__setitem__(self, key._uflclass, value)
def __delitem__(self, key):
return dict.__delitem__(self, key._uflclass)
def __contains__(self, key):
return dict.__contains__(self, key._uflclass)
def strides(shape):
if not shape:
return ()
stride = 1
result = [1]
for s in shape[-1:0:-1]:
stride *= s
result.append(stride)
return tuple(reversed(result))
def component_to_index(component, shape):
i = 0
for (c,s) in zip(component, strides(shape)):
i += c*s
return i
def index_to_component(index, shape):
assert index >= 0
component = []
a, b = -123, -123
for s in strides(shape):
a = index // s
b = index % s
index = b
component.append(a)
assert all(c >= 0 for c in component)
assert all(c < s for (c,s) in zip(component, shape))
return tuple(component)
def test_component_indexing():
print
s = ()
print s, strides(s)
c = ()
q = component_to_index(c, s)
c2 = index_to_component(q, s)
print c, q, c2
print
s = (2,)
print s, strides(s)
for i in range(s[0]):
c = (i,)
q = component_to_index(c, s)
c2 = index_to_component(q, s)
print c, q, c2
print
s = (2,3)
print s, strides(s)
for i in range(s[0]):
for j in range(s[1]):
c = (i,j)
q = component_to_index(c, s)
c2 = index_to_component(q, s)
print c, q, c2
print
s = (2,3,4)
print s, strides(s)
for i in range(s[0]):
for j in range(s[1]):
for k in range(s[2]):
c = (i,j,k)
q = component_to_index(c, s)
c2 = index_to_component(q, s)
print c, q, c2
# Taylor-Hood example:
# pressure element is index 3:
c = (3,)
# get flat index:
i = component_to_index(c, (4,))
# remove offset:
i -= 3
# map back to component:
c = index_to_component(i, ())
print c
# vector element y-component is index 1:
c = (1,)
# get flat index:
i = component_to_index(c, (4,))
# remove offset:
i -= 0
# map back to component:
c = index_to_component(i, (3,))
print c
# Try a tensor/vector element:
mixed_shape = (6,)
ts = (2,2)
vs = (2,)
offset = 4
# vector element y-component is index offset+1:
c = (offset+1,)
# get flat index:
i = component_to_index(c, mixed_shape)
# remove offset:
i -= offset
# map back to vector component:
c = index_to_component(i, vs)
print c
for k in range(4):
# tensor element (1,1)-component is index 3:
c = (k,)
# get flat index:
i = component_to_index(c, mixed_shape)
# remove offset:
i -= 0
# map back to vector component:
c = index_to_component(i, ts)
print c
def test_stackdict():
d = StackDict(a=1)
d.push("a", 2)
d.push("a", 3)
print d
d.pop()
print d
d.pop()
print d
if __name__ == "__main__":
test_component_indexing()
test_stackdict()
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