File: seq0.xml

package info (click to toggle)
ugene 51.0%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: trixie
  • size: 125,712 kB
  • sloc: cpp: 637,632; xml: 212,751; ansic: 81,474; javascript: 5,416; sh: 1,204; python: 771; makefile: 36
file content (27 lines) | stat: -rw-r--r-- 904 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
<?xml version="1.0" ?>
<multi-test>
	<load-document index="doc" url="primer3/primer3_xml/mispriming_long_lib/seq0.fa" io="local_file" format="fasta"/>
	<find-object-by-name index="seq" doc="doc" name="seq0" type="OT_SEQUENCE"/>
	<plugin_primer_3 sequence="seq">
		<plugin_primer_3_in 
			P3_COMMENT="should fail" 
			PRIMER_MAX_LIBRARY_MISPRIMING="18" 
			PRIMER_MAX_SELF_ANY="20" 
			PRIMER_MAX_SELF_END="20" 
			PRIMER_PAIR_MAX_COMPL_ANY="20" 
			PRIMER_PAIR_MAX_COMPL_END="20" 
			PRIMER_MAX_TM="100" 
			PRIMER_MIN_TM="10" 
			PRIMER_MIN_SIZE="20" 
			PRIMER_MAX_SIZE="20" 
			PRIMER_MIN_GC="10" 
			PRIMER_MAX_GC="90" 
			PRIMER_MISPRIMING_LIBRARY="primer_repeat_long_lib" 
			PRIMER_EXPLAIN_FLAG="1"/>
		<plugin_primer_3_out 
			PRIMER_LEFT_NUM_RETURNED="0" 
			PRIMER_RIGHT_NUM_RETURNED="0" 
			PRIMER_INTERNAL_NUM_RETURNED="0" 
			PRIMER_PAIR_NUM_RETURNED="0"/>
	</plugin_primer_3>
</multi-test>