1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23
|
<multi-test>
<!-- Run secondary structure prediction task on input seq, check its results -->
<load-document index="doc" url="sec_struct_predict/file0001.fasta" io="local_file" format="fasta"/>
<find-object-by-name index="seq" doc="doc" name="1FSC" type="OT_SEQUENCE"/>
<predict-sec-structure-and-save-results index="obj" seq-name="seq" algorithm-name="GORIV"/>
<check-num-annotations obj="obj" value="4"/>
<find-annotation-by-number index="a0" obj="obj" number="0"/>
<check-annotation-location annotation="a0" location="9..10" complement="0"/>
<find-annotation-by-number index="a1" obj="obj" number="1"/>
<check-annotation-location annotation="a1" location="12..15" complement="0"/>
<check-annotation-qualifier annotation="a1" qualifier="sec_struct_type" value="beta_strand"/>
</multi-test>
|