File: test_0003.xml

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<multi-test>
    <!-- Run secondary structure prediction task on input seq, check its results -->

    <load-document index="doc" url="sec_struct_predict/file0003.fasta" io="local_file" format="fasta"/>

    <find-object-by-name index="seq" doc="doc" name="abiD1" type="OT_SEQUENCE"/>

    <predict-sec-structure-and-save-results index="obj" seq-name="seq" algorithm-name="GORIV"/>

    <check-num-annotations obj="obj" value="27"/>

    <find-annotation-by-number index="a0" obj="obj" number="1"/>

    <check-annotation-qualifier annotation="a0" qualifier="sec_struct_type" value="alpha_helix"/>

    <check-annotation-location annotation="a0" location="14..21" complement="0"/>


    <find-annotation-by-location index="a1" obj="obj" location="123..140" complement="false"/>

    <check-annotation-qualifier annotation="a1" qualifier="sec_struct_type" value="beta_strand"/>


    <find-annotation-by-location index="a2" obj="obj" location="214..222" complement="false"/>

    <check-annotation-qualifier annotation="a2" qualifier="sec_struct_type" value="alpha_helix"/>


</multi-test>