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import os
from setuptools import setup, find_packages, Extension
ext = Extension('utils', ['umis/utils.pyx'])
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(
name='umis',
version='1.0.9',
description='Package for estimating UMI counts in Transcript Tag Counting data.',
packages=find_packages(),
install_requires=['click', 'pysam>=0.8.3', 'pandas', 'regex', 'scipy', 'toolz'],
ext_modules=[ext],
setup_requires=['cython'],
entry_points = {
'console_scripts': ['umis=umis.umis:umis']
},
url='https://github.com/vals/umis',
author='Valentine Svensson',
author_email='valentine@nxn.se',
long_description=read('README.md'),
package_data = {
'': ['examples/*/*.json']
}
)
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