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# Usage
```
> ./run_example.sh
[bwa_index] Pack FASTA... 0.00 sec
[bwa_index] Construct BWT for the packed sequence...
[bwa_index] 0.00 seconds elapse.
[bwa_index] Update BWT... 0.00 sec
[bwa_index] Pack forward-only FASTA... 0.00 sec
[bwa_index] Construct SA from BWT and Occ... 0.00 sec
[main] Version: 0.7.17-r1194-dirty
[main] CMD: ../bwa/bwa index -p index/example_ref example_ref.fa
[main] Real time: 0.015 sec; CPU: 0.010 sec
Writing index/example_ref.uncl
Reading fast5 paths
Aligning
f41a60f7-de4a-4b17-9f54-387e52d60b65 3562 86 118 - Escherichia_coli_chromosome:2400000-2410000 10000 6937 6975 38 39 255 ch:i:486
st:i:257117 mt:f:22.596806
```
# Data Source
Example data obtained from https://github.com/LomanLab/mockcommunity
Read extracted from https://nanopore.s3.climb.ac.uk/Zymo-GridION-EVEN-BB-SN_signal.tar
Reference extracted from https://s3.amazonaws.com/zymo-files/BioPool/ZymoBIOMICS.STD.refseq.v2.zip
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