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Author: Michael R. Crusoe <crusoe@debian.org>
Description: Use the Debian pdqsort-dev package
Forwarded: not-needed
--- uncalled.orig/setup.py
+++ uncalled/setup.py
@@ -10,10 +10,6 @@
SUBMOD_DIR = os.path.join(ROOT_DIR, "submods")
SUBMODS = [
- "bwa",
- "fast5",
- "hdf5",
- "pdqsort",
"toml11"
]
@@ -103,7 +99,7 @@
"./submods", #TODO: consistent incl paths?
subprocess.check_output("pkg-config --cflags hdf5-serial | sed 's/-I//'", shell=True, encoding='UTF-8').strip(),
"/usr/include/fast5/",
- "./submods/pdqsort",
+ "/usr/include/",
"./submods/toml11",
get_pybind_include()
],
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