File: run_example.sh

package info (click to toggle)
uncalled 2.3%2Bds-3
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 952 kB
  • sloc: cpp: 5,335; python: 2,007; sh: 125; makefile: 69
file content (13 lines) | stat: -rwxr-xr-x 343 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
 
#!/bin/bash

#Expected output: f41a60f7-de4a-4b17-9f54-387e52d60b65	3086	186	251	+	Escherichia_coli_chromosome:2400000-2410000	10000	6826	6891	63	66	255

cd `dirname "${BASH_SOURCE[0]}"`

if [ -d index ]; then
    rm -r index
fi

mkdir index
uncalled index -o index/example_ref example_ref.fa
uncalled map index/example_ref fast5_filename.txt